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Terms from Genetic Material Unit of NW 04-350

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Term
Definition
protein   one of the major classes of biomolecules   composed of chains of amino acids  
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nucleic acid   one of the major classes of biomolecules   composed of chains of nucleotides  
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nucleotide   monomeric subunit of nucleic acids   composed of a pentose sugar, nitrogenous base, and at least one phosphate group  
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nucleoside   composed of a pentose sugar and a nitrogenous base    
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enzyme   a protein that catalyzes a biochemical reaction    
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radiolabelling   growing an organism in the presence of a radioactive isotope, which results in the incorporation of that isotope into the molecules of the organism    
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pellet   a collection of cells or other solid material at the bottom of a tube after centrifugation    
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supernatant   the liquid above the pellet after centrifugation    
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purine   one of the classes of nitrogenous bases, composed of two rings   includes adenine and guanine  
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pyrimidine   one of the classes of nitrogenous bases, composed of one ring structure   includes thymine, cytosine, and uracil  
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ribose   one of the pentose sugars found in nucleic acids, with an OH at 2'    
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deoxyribose   one of the pentose sugars found in nucleic acids, without an OH at 2'    
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methyl cytosine   a chemically modified version of cytosine that has an additional methyl (CH3) group added. This modification alters its ability to form hydrogen bonds and pair with other bases.    
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chemically modified bases   nitrogenous bases that have had functional groups added or removed that alter their base pairing properties.    
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deoxy adenosine monophosphate   dAMP, a nucleotide containing deoxyribose, adenine attached to 1', and a single phosphate attached to 5'    
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adenosine diphosphate   ADP, a nucleotide composed of ribose sugar, with adenine attached to 1' and two phosphates attached to 5'    
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dNTP   deoxy nucleoside tri phosphate, a generic collection of nucleotides, all of which are composed of deoxyribose sugar, with three phosphates attached to 5'. However, any of the nitrogenous bases (ATCG) could be attached to 1'.   These are the monomeric subunits used to build a DNA strand  
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NTP   nucleoside tri phosphate, a generic collection of nucleotides with three phosphates attached to 5' of ribose sugar. Any base could be attached to 1' (AUCG)   These are the monomer subunits used to build an RNA strand.  
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Chargaff's Rules   relationship that applies to double stranded nucleic acids. Concentration of purines = concentration of pyrimidines because of complementary base pairing. A=T, C=G    
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antiparallel   when two strands of nucleic acid are oriented opposite to each other, 5' end of one opposite the 3' end of the other    
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phosphodiester bond   covalent bond that links nucleotides into a chain. Extends from 3' carbon to 5' carbon of next nucleotide in the chain.    
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peptide bond   covalent bond that links amino acids into a chain forming a polypeptide. Extends from carboxy end of first amino acid to amino end of the second.    
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complementary base pairng   when hydrogen bonds develop between nitrogenous bases. Responsible for Chargaff's rules   in a double stranded nucleic acid, this pairing links the two strands together.  
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helix   the three dimensional structure of double stranded nucleic acid when the two strands rotate around each other to form a spiral staircase    
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major groove   a large spatial gap between the two sugar phosphate backbones of a double stranded nucleic acid.   provides a binding point for proteins on the surface of a double stranded DNA that targets specific sequences of bases that are accessible through this gap.  
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minor groove   a small spatial gap between the two sugar phospahte backbones of a double stranded nucleic acid helix.   the gap is not large enough to allow access to bases in the center of the DNA molecule. so it is not used for base sequence specific binding of proteins.  
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uracil   pyrimidine typically found in RNA but not DNA unless another base as been chemically altered.    
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internal base pairing   the formation of hydrogen bonds between complementary bases in the same strand of nucleic acid   responsible for the formation of complex shapes in single stranded RNA molecules  
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hair pin   one type of secondary structure created by internal base pairing    
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stem loop   one type of secondary structure created by internal base pairing. a lollipop like structure in the RNA    
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supercoil   a double helix (as of DNA) that has undergone additional twisting in the same direction as or in the opposite direction from the turns in the original helix    
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nucleoid   supercoiled non relaxed circular chromosome of prokaryotic organism, floating in the cytoplasm of the cell    
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chromosome   long strand of DNA double helix that may contain many genes. First identified as a "colored body" that appears in prophase of mitosis   may be many linear units in eukaryotes or a single circular unit in prokaryotes  
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chromatin   a composite of DNA and protein that makes up a chromosome    
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chromatin structure   the organization and compaction of chromatin. Capable of change depending on how tightly the proteins are attached to the DNA and how much compaction has occurred.    
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euchromatin   Less organized and compacted chromatin. Associated with areas of the chromosome actively expressed    
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heterochromatin   Highly organized and compacted chromatin. Associated with areas of the chromsome not actively expressed.   Found near the centromere and ends of the chromosome.  
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histone   group of positively charged proteins that bind to DNA. Involved in forming nucleosomes and other chromatin structure.    
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nucleosome   histone core with double stranded DNA wrapped around it, held in place by histone H1. Most fundamental unit of chromatin structure   an individual bead on the string  
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30 nm fiber   formed when multiple nucleosomes aggregate together to form a higher level of chromatin organization.    
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scaffold proteins   proteins which the 30 nm fiber attach to, forming a lamp brush chromosome.    
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lamp brush chromosome   loops of 30 nm fibers coming off a core of scaffold protein. The typical chromatin structure during the majority of the life of the cell    
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compacted replicated chromosome   the form of the chromosome in its typical X shaped structure that is visible during prophase of nuclear division and later stages   a fully compacted chromosome in its most heterochromatic state  
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centromere   a sequence within a chromosome that serves as a binding point that allows replicated sister chromatids to remain connected until anaphase of nuclear division.    
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telomere   the ends of a linear chromosome composed of the same repeated telomere sequence that does not code for any RNA or protein.    
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intergenic space   sequence of DNA on the chromosome in between individual genes    
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gene   a unit of information found on a chromosome.   at the least it serves as a transcriptional unit, used to produce RNA  
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