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WEEK 5:
Protein Folding + Function
| Question | Answer |
|---|---|
| polypeptide folding into tertiary structure is driven by what | interactions between secondary structure elements + entropy (burying hydrophobic residues) |
| hydrophobic interactions | non polar parts buried inside to maximise entropy |
| electrostatic interactions | VDW, hydrogen bonds, ionic interactions |
| major stabilising forces in proteins | hydrophobic interactions, electrostatic interactions, covalent bonds |
| entropy | disorder - ability to make other interactions |
| haemaglobin contains what | 2 alpha subunits + 2 beta subunits + haem group |
| deoxyHb alpha beta dimers are held together by | ionic bonds + hydrogen bonds |
| how do bonds in deoxyHb alpha beta dimers weaken | when oxygen bond |
| T (tuat) Hb | deoxygenated Hb |
| R (relaxed) Hb | oxygen binding |
| Hb oxygen sigmoidal curve explanation | |
| main protein classes | fibrous, globular, membrane |
| fibrous | secondary structure eg keratin |
| globular | secondary structure elements interspaced with irregular loops |
| membrane | integral membrane proteins with 1 or more hydrophobic domains spanning lipid bilayer eg ion channels |
| disruption to metabolic pathway | |
| impairment/ loss of defence | |
| protein aggregation | |
| dysfunction of regulatory protein/ receptor | |
| sickle-cell anaemia | single mutation in beta subunit of Hb, at position 6 (glutamate) becoming valine, 2 copies of Hb aggregates |
| pathology of sickle cell anaemia | Hbs carrying E6V mutation aggregates forming fibres in low oxygen conditions, distorting erythrocytes into sick shape so block capillary blood flow |
| mechanisms to prevent/ remove misfolded proteins | chaperone mediating folding, proteasome (via ubiquitin) + lysosome (in autophagy) to mediate breakdown |
| transmissible spongiform encephalopathies | genetic or acquired |
| prion proteins form | insoluble fibrillary aggregates + small soluble oligomers |
| glycosylation | attachment of carbohydrates, sugars either N-liked (to asparagine) or O-linked to serine/threonine, involvedi n cell-cell recognition |
| glycosylation importance | adids folding, infuence new protein, |
| hydroxylation |