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WEEK 5:

Protein Folding + Function

QuestionAnswer
polypeptide folding into tertiary structure is driven by what interactions between secondary structure elements + entropy (burying hydrophobic residues)
hydrophobic interactions non polar parts buried inside to maximise entropy
electrostatic interactions VDW, hydrogen bonds, ionic interactions
major stabilising forces in proteins hydrophobic interactions, electrostatic interactions, covalent bonds
entropy disorder - ability to make other interactions
haemaglobin contains what 2 alpha subunits + 2 beta subunits + haem group
deoxyHb alpha beta dimers are held together by ionic bonds + hydrogen bonds
how do bonds in deoxyHb alpha beta dimers weaken when oxygen bond
T (tuat) Hb deoxygenated Hb
R (relaxed) Hb oxygen binding
Hb oxygen sigmoidal curve explanation
main protein classes fibrous, globular, membrane
fibrous secondary structure eg keratin
globular secondary structure elements interspaced with irregular loops
membrane integral membrane proteins with 1 or more hydrophobic domains spanning lipid bilayer eg ion channels
disruption to metabolic pathway
impairment/ loss of defence
protein aggregation
dysfunction of regulatory protein/ receptor
sickle-cell anaemia single mutation in beta subunit of Hb, at position 6 (glutamate) becoming valine, 2 copies of Hb aggregates
pathology of sickle cell anaemia Hbs carrying E6V mutation aggregates forming fibres in low oxygen conditions, distorting erythrocytes into sick shape so block capillary blood flow
mechanisms to prevent/ remove misfolded proteins chaperone mediating folding, proteasome (via ubiquitin) + lysosome (in autophagy) to mediate breakdown
transmissible spongiform encephalopathies genetic or acquired
prion proteins form insoluble fibrillary aggregates + small soluble oligomers
glycosylation attachment of carbohydrates, sugars either N-liked (to asparagine) or O-linked to serine/threonine, involvedi n cell-cell recognition
glycosylation importance adids folding, infuence new protein,
hydroxylation
Created by: kablooey
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