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Lecture 2.4
Element 2- Biochemistry
| Question | Answer |
|---|---|
| What charge does DNA have and why? | Negative because the phosphate in the backbone is negatively charged due to the _O- |
| In what form do free DNA nucleotides float around in the cell? | With a triphosphate attached onto them |
| What happens when a nucleotide is added to a growing chain of DNA? | The outer two phosphates are cleaved off and are called pyrophosphates (like a little diphosphate). This is split into two phosphates bt a pyrophosphatase enzyme which makes the addition of the nucleotide to the DNA irreversible. |
| Explain the difference between a purine and a pyramidine | Purines are double ringed and pyramidines are single ringed |
| Which bases are purines and which are pyramidines? | Adenine and Guanine are purines. Cytosine, uracil and thymine are pyramidines |
| What is the role of exonuclease | Cleave nucleotides one at a time from the ends of the polynucleotide chain |
| What is the role of endonuclease | Recognise a restriction site and break the phosphodiester bond in the backbone there, separating the polynucleotide chain |
| How many hydrogen bonds are there between cytosine and it's complementary base on the other strand of DNA | Cytosine's complementary base pair is guanine and they have 3 hydrogen bonds between them |
| What can go wrong with cytosine? | It can deaminate and turn into uracil, but a special repair pathway reanimated it. |
| Why do bacteria use uracil and not thymine? | It is easier to manufacture |
| Why is the deamination of cytosine not a problem for humans? | In DNA it is repaired through a special repair pathway and in RNA its not an issue because there so many mRNA molecules around in the cell |
| Why do humans have thymine instead of uracil in their DNA? | If uracil was involved then the body would think it was a deaminated cytosine and reanimated it. |
| What is a nucleoside? | A nucleotide without the phosphate group |
| What type of bond links the nitrogenous base to the sugar? | Glycosidic bond |
| Describe the structure of the DNA helix | A double stranded right hand helix that rotates around a common axis. The strands are antiparallel (they run in opposite directions) |
| What are the differences between major and minor grooves? | The distance between the two strands of backbone in a DNA molecule differs along the strong. The minor groove occurs when the strands are close together and the major groover is when they're far apart. |
| What is the major groove's function? | Allow for more space for the proteins that alter the DNA shape to interact with the bases because the backbone isn't in the way. |
| What bond is present in the backbone of a DNA molecule? | Phosphodiester bond |
| What is the definition of a genome? | Genetic info of an organism. Divides into chromosomes |
| Define gene | Basic unit of inheritance. e.g. protein structure |