amino acids in proteins
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The pKa for alpha-amino groups is | approximately 9.5 (8.8 - 11.0), protonated at pH of 7 with a positive charge.
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The pKa for alpha-carboxyl groups is | approximately 2 (1.8 - 2.4), mostly dissociated at pH of 7 with a negative charge.
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alanine | ala
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arganine | arg
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asparagine | asn
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aspartate | asp
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cysteine | cys
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glutamate | glu
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glutamine | gln
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glycine | gly
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histidine | his
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isoleucine | ile
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leucine | leu
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lysine | lys
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methionine | met
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phenylalanine | phe
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proline | pro
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serine | ser
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theonine | thr
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tryptophan | trp
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tyrosine | tyr
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valine | val
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Essential AA: Little Valentine Take My Heart, Practicing Love Improves The Art | Leucine Valine Tryptophan Methionine Histidine Phenylaline Lysine Isoleucine Threonine Arginine
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Nonessential amino acids: Almost All Girls Go Crazy Grabbing Protracted Slug Testicles | Alanine, Asparagine, Glycine, Glutamate, Cysteine, Aspartate, Glutamine, Proline, Serine, Tyrosine
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Which contain R-groups that are nonpolar, polar? | If an R-group contains an oxygen or a nitrogen, it is polar.
If an R-group does not contain oxygen or nitrogen, it is nonpolar.
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NOnpolar= | No Oxygen or Nitrogen in nonpolar R groups
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Which R-groups are charged ? | GLAAH- It hurts to be shocked by something with a charge!
Glu, Lys, Asp, Arg, His
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polar groups: Seriously The Tyrone's Ass is Glowing | Ser, Thr, Tyr, Asn, Gln
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What AA's can form salt bonds? | AG neg, AL pos
Aspartic acid, Glutamic acid- neg
Arginine, Lysine-pos
Histidine is pos when ph>6
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Aspartic acid pka | 4
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glutamic acid pka | 4
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histidine pka | 6
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lysine pka | 10
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arginine pka | 12
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cysteine pka | 8
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tyrosine pka | 8
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positively charged R groups will be ____ if _____ | positive (+1, pka>ph
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negatively charged R groups will be ____ if ____ | negative (-1), ph>pka
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The charge on the alpha-carboxyl group is neutral if the pH of the solution is ____ and is negative if the pH of the solution is _____. | below 2, above 2
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The charge on the alpha-amino group is positive if the pH of the solution is _____ and is neutral if the pH of the solution is _____. | below 9.5, above 9.5
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how to calculate pL | pI = (pKa1 + pKa2)/2
e.g (pka-alpha-amino + pka-alpha-carboxyl)/2
e.g. (pka-alpha-amino + pka-R group)/2
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go over charges on proteins | in notebook and ch 6 problems
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AA has a pos charge when | ph of solution<pL
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AA has a neg charge when | ph of solution>pL
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What is the charge of histidine below/above pka? | pka=6
ph>pka= neutral-no salt bonds
ph<pka= positive
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