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Intro to Biochem
Classes of Biological Molecules and Cell Structure
| Term | Definition |
|---|---|
| Proteins | Are composed of 20 amino acids - Made using combinations of the 20 available amino acids, with the order determining the protein's 3D shape. |
| Peptide bonds | Linked together to form long polymers. |
| 3D structures of proteins | Folded shapes that are key for biochemical reactions to proceed. |
| Carbohydrates | Important fuel source for most organisms. |
| Glucose | The most common carbohydrate. |
| Glycogen | Stored form of glucose in animals. |
| Starch | Stored form of glucose in plants. |
| Lipids | Commonly called 'fats'. - Form the cell membrane and are key stores of energy. |
| Hydrophobic regions | Water repelling regions in lipids. |
| Hydrophilic regions | Water loving regions in lipids. |
| Cell membrane | Formed by lipids, separates the inside from the outside of a cell. |
| Nucleic Acids | Store and transfer genetic information of an organism. |
| Nucleotides | Composed of 4 types: Adenine (A), Cytosine (C), Guanine (G), and Thymine (T). |
| RNA | Ribonucleic acid, one type of nucleic acid. |
| DNA | Deoxyribonucleic acid, another type of nucleic acid. |
| Central dogma of Biochemistry | The process of DNA being transcribed to RNA, which is then translated to protein. DNA -> RNA -> Proteins. |
| Plasma membrane | The lipid cell membrane that separates the inside from the outside environment. |
| Cytoplasm | Inner, fluid region of a cell where many biochemical reactions take place. |
| Nucleus | Double membrane organelle where DNA is stored in Eukaryotic cells. |
| Mitochondria | Responsible for energy generation (ATP) within the cell. An organelle with a double membrane and internal structure that significantly increases its surface area. |
| Endoplasmic Reticulum (ER) | Consists of smooth and rough ER, where smooth ER processes exogenous chemicals and rough ER includes ribosomes for protein modification. |
| Smooth ER | A type of endoplasmic reticulum that processes exogenous chemicals, such as drugs. |
| Rough ER | A type of endoplasmic reticulum that includes ribosomes and leads to modifications of synthesized proteins. |
| Golgi | An organelle where vesicles from the Rough ER travel for further processing of proteins, including the addition of carbohydrate molecules. |
| Secretory granule | Buds from the Golgi complex that travel to the cell membrane to release their contents outside of the cell. |
| Endosome | Involved in taking material from the outside of the cell into its interior through a process called endocytosis. |
| Lysosomes | Organelles that contain digestive enzymes used to degrade ingested material, such as bacteria. |
| Biochemical Reactions | All biochemical reactions take place within an aqueous environment, with a typical cell being 70% water. |
| Water | Important for biochemical reactions due to its polarity, which allows for the formation of hydrogen bonds. |
| Polarity | A property of water that leads to an unequal charge distribution, allowing for hydrogen bond formation. |
| Non-covalent bonds | Typically weak, reversible interactions that include ionic, hydrogen, and van der Waals bonds. |
| Ionic bonds | Interactions between distinct electrical charges on atoms, such as negative to positive. |
| Hydrogen bonds | Relatively weak bonds formed between electronegative atoms like oxygen and nitrogen. |
| Van der Waals bonds | Weak interactions that occur between non-polar or uncharged molecules. |
| Biological molecules | Four classes: proteins, carbohydrates, lipids, and nucleic acids. |