Molecular Biology
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What end do nucleotides add to? | 3'
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Adenine pairs with.... | thymine
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Guanine pairs with... | cytosine
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Are C-G bonds more stable or are A-T bonds more stable? | C-G because of 3 hydrogen bonds
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A nucleotide has | nucleic acid base, sugar and a phosphate
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The phosphodiester bond between neighboring nucleotides in DNA is | 3' to 5'
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What are the 4 types of nitrogenous bases | adenine, guanine, thymine, cytosine
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purines | adenine and guanine
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pyrimidines | cytosine and thymine
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In RNA U (uracil) replaces.... | thymine
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More G-C bonds means | higher melting point
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C-value and C-value paradox | genome size; genome size is not related to complexity of an organism
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Decrease in salt concentration will....... Tm of DNA | Decrease
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DNA can be denatured by: | low salt concentration, heat, organic solvents, High pH
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The most abundant RNA in a cell is: | rRNA (protein translation)
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DNA insertion in a vector shuts down the LacZ gene expression, and turns the c colony to white | Blue-white screening
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Blue colonies | no insert
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white colonies | contains insert
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Chain terminating nucleotides | ddNTPs
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What are the differences btwn sanger sequencing and PCR | ddNTPs in sanger and theres 2 primers for PCR and only 1 for DNA sequencing
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Shows where your cloning gene is expressed | Reporter gene
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The enzyme that cuts at a specific site is | restriction enzyme
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DNA fingerprinting is | used to identify persons base on their unique DNA
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Southern blot is to detect specific | DNA
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The enzyme use in PCR is | DNA ligase
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Which cycle starts to make two of exact length specified by the pair of primers in PCR | 3
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cDNA is: | eukaryotic DNA with only exons that can be cloned into prokaryotes
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Scientists use PUC18 as a gene cloning vector that includes a gene for a portion of beta-galactosidase | if foreign DNA is inserted, the beta galactosidase marker is inactivated, and the colonies remain white
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To carry out sanger sequencing a mixture is needed containing | SSDNA, DNA polymerase, four deoxyribonucleotides a,t,c,g
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What is the function of dideoxynucleotides in sanger DNA sequencing | they stop synthesis at a specific site, so the base at that site can be determined
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a method for determining the DNA sequence of an entire genome. After a genome is cut into small fragments, each fragment is sequenced and then placed in the proper order | whole genome shotgun method
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ddNTPs are used in which biochemical reactions | DNA sequencing
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What is BLAST | BLAST searches for sequence matches in a nucleotide or protein database
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You have a DNA sequence and you wish to find out whether it could encode a protein. Which BLAST program should you use? | BLASTP
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Which of the following reporter genes cannot be used for live cell imaging? | beta-galactosidase
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Genome-wide gene expression patterns can be studied using | microarrays
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To use a microarray, mRNA from cells of interest are first converted to | cDNA
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When DNA is damaged by UV light and is not repaired | neither DNA replication nor transcription can occur and the organism will probably die
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Which of the following mechanisms is required to repair pyrimidine dimers cause by ultra violet in the presence of light in bacteria | photoreactivation
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In methyl-directed mismatch repair, the strand that is repaired is | the non-methylated strand
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In humans, xeroderma pigmentosum is cause by mutations in | nucleotide excision repair
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DNA replication is | semiconservative
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DNA polymerase I is.... | most abundant
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DNA polymerase II is... | major enzyme for DNA replication
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Arrange the following proteins in the proper order they participate in DNA replication | helicase, SS binding protein, primase, DNA polymerase I
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How many replication forks would be present in the E. Coli chromosome for cells that are growing under optimal condition | two
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DNA polymerase use their....... activity to remove a mismatched basepair | 3' to 5'
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Proofreading by DNA polymerase involves the removal of | several bases on the newly synthesized strand of DNA
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DNA polymerase cannot replicate | the 3' end of linear chromosomes
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Which of the following best describes the function of telomerase at the telomere? | it adds new DNA to the longer strand of the DNA overhang
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