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Chapter 1: The Cell: A Microcosm of Life

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Question
Answer
Cells   basic living, structural, and functional units of the body  
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Eukaryotic cells   have a defined nucleus evolved from prokaryotic cells  
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____ is a necessity in cells.   Specialization  
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8 Components of Typical Cells   -plasma membrane -cytoplasmic matrix -mitochondrion -nucleus -endoplasmic reticulum -golgi apparatus -lysosomes -peroxisomes  
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Plasma membrane is composed of these 2 structures   phospolipids proteins  
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The plasma membrane has ____ and _____ type of layers   hydrophobic hydrophilic  
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Phospholipids   combination of phosphoglycerideas & phosphingolipids  
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What gives the components of the plasma membrane their functions?   proteins  
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What is the geometry of the plasma membrane?   asymmetrical  
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What type of structures does the membrane contain? (ex. solid or not)   fluid  
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What makes the plasma membrane different from other membranes?   greater CHO and cholesterol content  
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In the plasma membrane, there is a ___ bilayer concenpt.   lipid  
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What is the glycocalyx?   it is the sugar coat on a cell that protects the cell and plasma membrane from bacteria  
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Glycoproteins   important integral membrane proteins in the lipid bilayer of the plasma membrane which plays a role in cell-cell interactions  
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2 types of membrane proteins   integral peripheral  
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Integral membrane proteins   in the lipid bilayer  
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Peripheral membrane proteins   through entire membrane and stick out  
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Cytoplasmic Matrix   cytoskeleton providing: -locomotion -transport -structural support  
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3 components of cytoskeleton   -microtubules -microfilaments -intermediate filaments  
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What is the fluid that surrounds the cytoplasmic matrix?   cytoplasm  
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Microtubules   provide mechanical support for the cell to determine its shape  
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Microfilaments   "assembled" or "disassembled" for cell locomotion, changes in cell shape, phagocytosis, etc  
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Intermediate filaments   provide mechanical strength to cells that go thru more stress such as neurons, muscle cells, and epitheial cells  
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Is there communication between cells in the cytoplasmic matrix?   yes, intracelluar  
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What does the cytoplasmic matrix transfer?   DNA/ RNA  
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Structural arrangement of the cytoplasmic matrix influences these metabolic pathways   glycolysis hexose monophosphate shunt (pentose phosphate pathway) glycogenesis and glycogenolysis fatty acid sythesis  
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Fatty acid synthesis   production of nonessential, unsaturated fatty acids  
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Glycogenesis and glycogenolysis   glycogen syntheis and the breakdown f glycogen  
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Hexose monophosphate pathway   generates NADPH and pentoses  
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Glycolysis   metabolic pathway that converts glucose into pyruvate. The free energy released used to form ATP and NADH  
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Role of mitochondrion   energy production and oxygen use site  
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What surrounds the mitochondria?   double membrane called the mitochondrial membrane  
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Mitochondrial membrane (outer & inner)   outer: porous inner: selectively permeable site of electron transport chain  
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Mitochondria try to increase their surface area why?   it increases the rate of reactions  
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Mitochrondrial matrix is the site of what?   TCA cycle fatty oxidation synthesis  
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Mitochondrial matrix contains ____ so organelles can ____.   DNA; divide  
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Mitochondrial DNA is _____ ONLY.   maternal  
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All cells have ____, except _____.   mitochondria; erythrocytes (need glycolysis)  
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Mitochondria have what?   separate DNA so that they can create more or less of them based on needs of the cells  
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Nucleus   largest organelle  
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Nucleus is surrounded by?   nuclear envelope  
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Nucleus contains?   DNA  
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Cell genome   entire set of genetic information  
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Nucleoli   condensed chromatin  
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Nucleus is the site of?   DNA replication  
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In the nucleus, ____ synthesis occurs.   protein; followed by transcription, translation, and elongation  
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Nucleus contains these acids   nucleic acids  
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Nucleus holds these 2 genetic materials that are important to chromosomes   DNA and RNA  
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Within the nucleus, macromolecules are formed from units of ____/_____.   nucleotides/bases  
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Which nucleotides/ bases are found in both DNA and RNA?   adenine, guanini, and cytocine (A, G, and C)  
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Which nucleotide/ base is found only in RNA?   uracil (U)  
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Which nucleotide/base is found only in DNA?   Thymine (T)  
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In DNA/ RNA, how do the nucleotides/ bases come together?   by complementary base pairing  
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What are the base pairings?   ex. g-C, A-U or T.  
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In the nucleus, cell replication occurs. What is this?   DNA unravels and nucleotides are added to each strand to make 2 sets  
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In the nucleus, cell transcription occurs. What is this?   mRNA created from sequence of one DNA strand (sense strand) use of genes (codes for specific protein) use of introns and exons  
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Genes   code for a specific protein  
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Introns   (transcription) intervening sequences that help from proteins  
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Exons   no posttranscriptional processing helps to form protein  
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There are parts of the DNA that aren't ____.   Coding  
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Describe the process of translation   -mRNA codes fro amino acid sequence to from protein -mRNA is synthesized in nucleus, then moves to the RER -codons assist in this process by coding for amino acids with the 3 base sequences -tRNA brings amino acids to mRNA on ribosomes  
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Codons   3-base sequences that code for amino acids  
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How do different characteristics of amino acids affect codons?   They form with the codons and perform different functions  
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After amino acids (AAs) are postioned, ____ bonds form between them.   peptide  
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Elogation   peptide bonds form in between the positioned amino acids.  
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Are all genes expressed in specialized cells of a given organ expressed?   no! only a few  
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"Nonsense" codon   signals end of protein (termination or stop codon)  
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Endoplasmic Reticulum   network of membranous channels used to communicate from innermost part of cell to exterior  
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What are the types of ER?   rough ER smooth ER sarcoplasmic retitulum  
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Rough ER   (studded with ribosomes) protein syntheisis  
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Smooth ER   lipid synthesis  
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Sarcoplasmic reticulum   (in muscle) calcium ion pump  
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Golgi Apparatus   protein trafficking and sorting  
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Golgi Apparatus is made up of?   4-8 cisternae (stacks)  
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What type of networks are at either end of the golgi apparatus?   tubular; cis and trans network  
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Cis-Golgi Network   entrance  
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Trans-Golgi network   exit  
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What is the Golgi Apparatus connected to?   ER by transport vesices  
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Lysosomes & Peroxisomes   enzyme-filled organelles  
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Lysosomes   cell's digestive system, it recycles parts of the cell that's not needed anymore  
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Peroxisomes   site of oxidative catabolic reactions (digestion)  
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Lysosome functions   phagocytosis autolysis bone resoption hormone secretion and regualtion  
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Peroxisome functions   oxidize fatty acids to acetyl CoA amino acid catabolism detoxifying reactions  
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What are the 3 types of cellular proteins?   -receptors -transport proteins -enzymes  
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Receptors   (on the cell membrane) modify cell's response to environment  
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Transport proteins   (through cell membrane) regulate flow in and out of cells  
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Enzymes   catalysts (excite a reaction  
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Ligands   molecular stimuli that attach to receptors  
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Types of receptors   bind to ligand and convert it to internal signal serve as ion channels internalize stimulus intact -various responses when bonded or internalized  
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Example of internal chemical signal   3', 5' -cyclic AMP  
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Ion channel example   receptor for acetylcholine  
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Internalization stimulus example   insulin, triodothyronine  
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Transport proteins may act as ___ or ___.   carriers or pumps  
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Transport proteins may provide ____ through which _____ diffuse.   pores; molecules  
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What is the most studied ion pump?   sodium  
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The sodium/ potassium pump provides how much energy to maintain ATPase?   30-40%  
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Catalytic Proteins   (enzymes) how it functions depends on protein and prosthetic group or coenzyme -these also have specificity  
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Based on availability of substrate and free energy, most catalytic proteins are ____.   reversible  
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Regulation of catalytic proteins   -covalent modification through hormone stimulation -modulation of allosteric enzymes -enzyme induction  
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Allosteric   those with another site  
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Enzyme induction   changes in concentrations of inducible enzymes (down or up regulated at the transcriptional level)  
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Examples of enzyme types   -oxidoreductases -transferases -hydrolases -lyases -isomerases -ligases  
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Oxidoreductases   (enzyme type) reactions in which one compound is oxidized, another reduced (oxidation-reduction reaction)  
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Transferases   functional group transferred from one substrate to another  
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Hydrolases   hydrolysis of carbon bonds (breakdown of carbon molecules)  
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Lyases   cleavage of C-C, C-S. and C-N bonds (no hydrolysis/ O-R)  
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Isomerases   interconversion of optical or geometric isomers (glycolysis; interconverting sugars)  
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Ligases   catalyze formation of C and other bonds (O, S, N, others) *protein synthesis makes new bonds  
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Clinical Applications of Cellular Enzymes -conditions for diagnostic suitability   -enzyme's degree of organ/tissue specificity -steep concentration gradient of enzyme activity between cell and surroundings -enzyme must function in cytoplasm -enzyme must be stable  
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What happens when there is increased production of an enzyme?   -malignant disease -results in tumor markers  
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Oncogenes   mutated genes that encode abnormal, mitosis-signaling proteins that cause unchecked cell division  
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Apoptosis   programmed cell death  
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What are potential mechanisms for apoptosis?   intracellular stimuli -create DNA damage -release of cytochrome c extracellular stimuli -tumor necrosis facotr family of hormones or agonists oncosis (swelling of the cell  
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Apoptosis: intracellular stimuli   create DNA damage  
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Apoptosis: extracellular stimuli   tumor necrosis facotr family of hormones or agonists  
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Oncosis   cellular swelling  
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Why does Apoptosis occur?   To pthe spread of harmful effectsrevent  
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What is the major source of biological energy in cells?   ATP  
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ATP is needed for?   exertion anabolism active transport transfer of genetic info  
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Active transport involves?   ion pumps  
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Where does biological energy come from?   chemical reactions -macronutrients give energy -transferred from one form to another  
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What are the units of energy used?   cal, kcal, J, kJ  
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What are the equivalents of calories to Joules and kilocalories to kiloJoules?   1 cal= 4.18 J 1 kcal= 4.18 kJ  
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What type of broad chemical reactions are used to produce biological energy?   exothermic and endothermic  
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Activation Energy   energy to raise reactants to transition state  
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Can chemical reactions be reversed?   yes! most are reversible, but not all.  
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What role does high-energy phosphate have in cells?   provides energy storage  
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What do coupled reactions do?   help to transfer energy (ex. phosphorylation)  
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Phosphorylation   adding phosphate to a reactions  
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What role do reduction potentials have?   standard reduction potential- tendency of compound to donate and recieve electrons  
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Where is energy used from?   from the bond  
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Nutrigenetics   detecting gene variants within an indiviual  
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Nutrigenomics   seeing how environmental factors have an effect on genes and their interactions to determine applications  
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Nutritional Epigenetics   study of changes in gene expression that do not inviolve changes in the nucleotide sequence or DNA (ex. adding or subtracting a methyl group to see what happens to the DNA  
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