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micro module 2

chaps 8, 9 , 10 Talaro

QuestionAnswer
def of carbohydrate this chemical class resemles combos of carbon and water
def amino acids ; how many building blocks of proteins they have a baisc skeleton consisting of carbon linked to an amino group and carboxyl group and hydrogen atom; 20
def of lipids fat an optional term for a variety of substances that are not soluble in polar solvents (ei Water) but dissolve in nonpolar substnaces
def of proteins; how many amino acids do they contrina building blocks of proteins are amino acids they are what give structure behavior and unique qualities to living things; at least 50
def nitrogen base ; what arethe 2 fomrs ; what are the 2 purines; what are the 2 pyrimidines nitrogen subunit of nucleotide; purines and pyrimidines ; Adenine (A) and guanine(G); Thymine (T) and cytosine (C)
def covalent bond they form between atoms with valences that suit them to sharing electrons rathern than donating or receiving them
def oxidation any reaction that causes an atom to lose electrons
def hydrogen bond; how is this represented in drawing this bond does not involve sharing, losing or gaining electrons but is a weak electrostatic force that forms between hydrogen covalently bonded to one molecule and an oxygen or nitrogen atom ; with dotted line
def inorganic compund
def monosacharide a simple polyhydroxy aldehyde or ketone molecule containing 3-7 carbons
def phospholipid; is it hydrophobic or hydrophilic structural component of cell membranes they contrina only 2 fatty acids attached to the glycerol and the third glycerol binding dite holds the phosphate group; both are located on it
def peptide a molecule composed of short chains of amino acids
def polar; what is polarirty ; def nonpolar a molecule with unequal distribution of charges and shows polarirty; the molecule has a negative and positive pole; electrons are shared equally between 2 atoms and the molecule in neutral
def reactant; what is the result of a chemical reaction called the chemical substances that start a reaction and that are charged by the raction; products
def disaccharide a combo of 2 monosaccharides
def hydrolysis reaction a water molecule is required to break the bond between 2 glucose molecules
def peptide bond a covalent bond that forms between the amino group on one amino acid and the carboxyl group on another amino acid (these join amino acids )
def enzyme serve as teh catalusts for all chemical reactions in cells
def substrate
def nucleotide ; what are the 2 smaller units DNA and RNA are these polymer of repeating units; nitrogen base, sugar and phosphate
def electrolyte
def reversible reaction the reactants and products can be converted back and forth this depends on the proportions of the compounds
def functional group
def synthetic reaction the reactants bond together that produces an entirely nre molecule
def cation positively charged ions
def anion negatively charged ions
def ion they are unattached charged particles from a broken down ionic bond
def triglyceride storage lipidscomposed of single molecules of glycerol bound by 3 fatty acids
def cholesterol a sterol it is complec tinged compound found in cell membranes and animal hormones it reinforces the cell membrane in animal cells
def polypeptide contains an unspecified number of amino acids but usually more than 20 and is often a smaller subunit of a protein
def deoxyribonucleic acid DNA, a nucleic acid; mster computer of all cells contains codes of genetic info for instructions of each organisms heredity
def anedosine triphosphate ; aka a nucleotide contrasining adenine ribose and 3 phosphate rather than one, it releaes and stores energy for chemical reactions; ATP
def polysaccaride a polymer of five or more monosaccarides bound in linear or branched chain pattern
def fatty acid long chain unbranched hydrocarbon molecules with a carboxyl group at one end that is free to bind the the glycerol
def disulfide bond
def oxidation-reduction this substance can cause oxidation by taking electrons or it can be a substance that causes reductions by giving away electrons
def dehydration synthesis in order to form a carb bond one carbon gives up its OH group and the aotehr loses H from its OH group. Water is the product of this reaction
def monomer all macromolecules except lipids are formed by polymerization a process in which repeating subunits termed polymers
Atomic Structure: def atom; what are the particles in an atom; def protons; def neutrons; def of electrons; what forms nucleus of an atom all matter in the universe composed of this simple form of matter; protons, neutrons and electrons; positively charged particles; no charge; negatively charged; protons and neutrons
def ionic bond electrons are transferred completely from one atom to another and are not shared
atomic structure: what orbits the nucleus in energy shells; def of atomic number ; def of mass number; how many electroms are in 1st shell; how many electrons can be in seconds shell; electrons; this is the number of protons; the number of ptrons + neutrons; 2; 8
atomic structure carbon- how many shells does it have; what is atomic number ; what is atomic mass; how many electrons; 2; 6; 12; 6
atomic structure hydrogen: atomic number ; atomic mass; how many protons; how many electrons 1; 1; 1; 1
atomic structure oxygeon: atomic number; atomic mass; how many protons; how many neutrons; 8; 16; 8; 8
atomic structure nitrogen: atomic number; atomic mass; how many protons; how many neutrons; 7; 14; 7; 7
hydrogen: how is the molecule formed; each hydrogen molecule only has __ in outer shell; is this covalent of ionic bonding when 2 hydrogen atoms share their electrons and form a single bond; 1 so they need one to make outer shell full; covalent
oxygen: how do two oxygen molecules share to form oxygen; is this covalent or ionic bonding they share two molcules from each orbital to make O2; covalent
hydregen bonding: more extensive hydrogen bondign is responsible for what the structure and stability of proteins and nucleic acids
def hydrolysis: catabolic reactions involving energy transactions are eually active and require ___; hydrolysis reaction got its name why; def their own enzymes; they breaking of bonds usually requires the input of water; digestion of large substrates requires enzymes to break them down into smaller molecules so they can be used
def of oxidized; def oxidation these are compounds that lose electrons; the loss of electrons
def of reduced; reduction these are compounds that receive electrons; the gain of electrons
def of redox reaction; these reactions occur in ___; this is oxidation-reduction are common in the cell and indispersable to energy transactions; pairs
def of labile chemically unstable enzymes
def of denaturation; this destruction causes what; these nonfunctional enzymes block what rpocess by which the weak bonds that collectively maintain that native shape of the apoenzyme are broekn; extrem distortion of enzymes shape and prevents the substrate from attaching to the active site ; metabolic reactions and can lead to cell death
def of competitive inhibitions: what is it; a form of inhibition done by bacteria that they use a mimic substate for enzyme so enzyme will be occupied with fake substrate instead if reall one
def of negative feedback
def of endergonic; this cellular reaction is driven forward with the addition of energy
def of exergonic; why is this energy considered "free energy"; a cellular reaction that releases energy as it goes forward; b/c it is available to do work
def of phosphorylate this is the addition of phosphate to a substrate
def of dephosphorylate is the removal of a phosphate from a substrate
def of dehydrogenation removal of a hydrogen
def of decarboxylation removal of carbon dioxide from a substrate
def of catabolism; def anabolism; anabolism is aka larger molecules are degraded or broken down into smaller molecules with release of energy; smaller molecules build larger ones and results in the formation of cell structures it uses energy; biosynthesis
def metabolism; what are the 2 categories of it change pertains to all chemical and physical workings of the cell; catabolism and anabolism
enzymes: what are they; they are an example of ____; def of catalysts; does an enzyme create a reaction; proteins; catalyst; chemicals that increase the rate of a chemical reaction without becoming part of the products or being consumed in the reaction; no;
enzymes: are the used up or perminently changed by a reaction; can they be recycled; what are they greatly effected by; no; yes; temp and pH;
enzymes: in chemical reaction reactants are converted to what; enrgy is needed to initiate every such reaction and this limits its __; this resistance to a reaction is measurable by what products; rate; energy of activation
enzymes: how is the initial resistance overcome in lab; increaseing thermal energy (heat) to increase molecular velocity, increasing concentration of reactants to increase rate of collisions, adding a catalyst
enzymes: the reactant molecules are aka; are they larger or smaller than substrates; how is shape unique; do enzymes become part of the product because they bind to the substrate; how is the speed of enzyme measured substrates; larger; that it has pocket that fits only a particular substrate; no; by number of substrate molecules converted per enzyme per second
enzyme: what is promary structure of it; what are the 2 classifications; def of simple; proteins; simple conjugated; only contrins protein; contains protein and nonprotein molecules;
enzymes: what is name for the pocket where subtrate binds; the active site
enzymes: for reaction to take place what union must occur; this union is aka; what happens once enzyme-substrate complex is formed; a temporary enzyme-substrate union in active site; lock and key fit; the appropriate reaction occurs on the substrate
enzymes: def of cofactor; def coenzymes; meital ions (iron, copper, mag., etc) that activate enzymes and help brin active site and substrate close together and participates in chemical reaction; organic cofactors that remove a chemical group from substrate colecule
enzymes: how are they classified; according to characheristics such as site of action, type of action and substrate
enzymes: in disease: what are exoenzymes; aka pathogens secrete these the help them avoid host defenses or promote multiplication in tissues; endo toxins or virulence factors
enzymes: enzymes like to operate in what; def of labile the natural habitat of cells environment; when enzymes are subject to change in normal conditions they become chemically unstable;
enzymes: regulation of metabolism is largely due to regulation of enzymes why; b/c enzymes are critical to metabolic reactions;
enzymes and metabolic pathways- each step in the pathway is catabolized by what; enzymes set the rate of what; an enzyme; the pathways progression;
controlling action of enzymes: how can bacteria inhibit enzyme activity called competitive inhibition; it will supply a molecule that resembles the enzyme's nromal substrate and the mimic will occupy the enzymes active site preventing actual substrate from binding there;
controlling action of enzymes: def of regulatory/allosteric site a form of inhibition where enzyme has 2 binding sites this site is that it provides a negative feedback system that can slow down enzymatic activity once a certain number of products is produces (this regulates)
enzymes synthesis: def of enzyme repression; def of enzyme induction; enzyme inductions is good why a means to stop further synthesis of an enzyme somewhere along its pathway; enzymes are induced only when suitable substrates are present- the synthesis of an enzyme is induced by its substrate; prevents microbe from wasting energy
def of energy; name the forms of energy the capacity to do work or to cause change; thermal, radiant, electrical, machanical, atomic, chemical energy
energy: where is thermal energy from; radient energy from; electrical energy from; machanical energy from; atomic energy from; chemical energy from; molecular motion; visible light or other rays; flow of electrons; physical change in position; reactions in the nucleus; bonds of molecules
energy: how do cells manage it; why are exergonic and endergonic reactions coupled together; in the form of chemical reactions that change molecules; the released energy from the exergonic reaction is then used by the endergonic reaction
energy: cells extract _____ in nutrient fuels and apply that energy to what chemical energy; useful work in the cell
energy: during exergonic reactions what is pulled out of the atom; the removal of the electrons releases what; the harvested energy from the electrons is transferred to what molecule; ATP releases its energy for what reactions electrons; this releases their ingerent energy; ATP; endergonic ones
ATP is constantly being ___, ___, ___ made used and regenerated
ATP: how many parts are there;made of what; what is it classified as; ribose is what; 3; adenine and ribose (5 carbon monosaccharide) and 3 phosphate groups; nucleic acid; 5 carbon monosaccharide
ATP: what happens when the bonds of the phasphate groups are broken; breaking the bonds between 2nd and 3rd phosphate groups yeilds what moleucle; there is a release of free energy; ADP
Hydrolysis of ATP: this does what; ATP + ___ through a hydrolysis reaction uses what enzyme; To form ATP from ADP you need what; frees the molecule; water; ATPase; adentazyne phasphate group PO4 plus energy
redox reactions: oxidation and reduction always occur __; ozidation is the loss of what;reduction is the gain of what; simultaneously; electrons/ hydrogen atom; electrons/ hyfrogen atom
hydrogen atom: has how many protons; how many electrons 1;1
REDOX: way to remember this; what does leo says ger stand for; LEO says GEr; less equals oxidation (loos of electrons_; gain equals reduction (gain of electrons)
redox: they always occur in pairs with an electron donor and electron ecceptor, what is the name for this pair; electron transfer is __ transfer redox pair; energy
coenzymes: used to transport what; hydrogen atoms to electron transport system;
coenzymes: nicotinamide adenine dinucleotide: what is abrev.; what is oxidized form; what is reduced form; it is reduced when it comes into contact with what; is it charged NAD+; NAD+; NADH + H+; hydrogen atoms; yes
conenzymes: flavine adenine dinucleotide- what is abreviated name; is it charged; what is oxidized form; what is reduced form; reduced how; FAD; no ; FAD; FADH2; it picks up 2 hydrogen atoms
phosphorylation: def; ADP + ___ +____ = ___ process that adds an inorganic phosphate Pi to a substrate, converting it to ATP; phosphate (P) + energy = ATP;
def of hydrolysis; does this create a larger molecule or release of two smaller molecules the addition of water; creates 2 smaller molecules
def of dehydration synthesis; does this create a larger molecule or release of two molecules the removal of water; creates a larger molecule
dephosphorylation: def; give example the removal of a phosphate; ATP hydrolysis (breaks down to ADP)
def of bioennergetics the study of the mechanisms of cellular energy releases, including catabolic and anabolic routes
catabolism: what are the common paths used by many organisms glycolysis, Krebs cycle, respiratory chain
cellular respiration in bacteria: def; def of anaerobic respiration; in anaerobic respiration what may some species use as final elctron ecceptors; what are three it involves; a series of catabolic pathways leading to the formation of ATP; cell forms ATP w/o using free O2 as the final electron acceptor; nitrate, sulfate, CO2; glycolysis, Krebs cycle and electron transport system
cellular respiration in bacteria: def of fermentation; cell uses glycolysis to form ATP and an organic molecule is the final electron acceptor;
cellular respiration in bacteria: aerobic respiration: def; cell forms ATP while consuming free oxygen and oxygen in the final electron acceptor
cellular respiration in bacteria: what produces most ATP aerobic respiration, aneorbic respiration or fermentation aerobic respiration
most common catabolic pathways: name the five glycolysis, transition reactions, Krebs cycle, electron transport chain, fermentation
aerobic respiration (bacterial cell): glucose- what is the molecular formula; after aerobic respiration what does it yeild; the end products are energy rich ____ and energy poor __; C6H12O6 + 602 +38 ADP + 38 Pi; 6CO2 + 6H2O + 38 ATP; energy rich ATP and energy-poor carbon dioxide
Aerobic respiration; glycolysis: def; how many steps are there; site where is takes place; reactions of glycolysis occur in how many parts; this converts flucose through several steps into pyruvic acid; 9; cytosol; 2
Aerobic respiration; glycolysis: what is first part of glycolysis called; def of endogonic; what is 2nd part of glycolysis called; def of exergonic endogonic; uphil reactions energy is consumed; exergonic; downhill reactions and energy is released
Aerobic respiration; glycolysis: goal of it; to release energy and to form ATP;
Aerobic respiration; glycolysis: 1st part- what molecule do you start with; how many carbons does glucose have in start of glycolysis; what is metabolic formula of glucose; what is hydrolyzed in beginning; glucose; 6; C6H12O6; 2 ATP
Aerobic respiration; glycolysis: 1st part- when ATP is hydrolyzed what does that releases; what does glucose pick up from the product of hydrolysis; what molecule is formed from glucose picking up energy and inorganic phosphate; still 6 carbon 2 ADP + 2 inorganic phosphate molecules (P)+ energy; the energy and the 2 inorganic phosphates; fructose-1, 6-disphosphate; yes
Aerobic respiration; glycolysis: 1st part- what is initial substrate; what 1st phosphorulated; when the 2 ATP are hydropyzed what kind of reaction is this and why; at end of 1st step how many carbon are there glucose; glucose; endergonic reaction b/c substrate gets energy; still 6;
Aerobic respiration; glycolysis: 2nd part- what kind of reaction is this; what substrate do we start with; what is it borken down into; what are the names of the 2 three carbon molecules; exergonic; fructose-1, 6-diphosphate and 6 carbons; 2 three carbon molecules; PGAL molecules (there are 2 of them);
Aerobic respiration; glycolysis: 2nd part- does each PGAL molecule go through same process; what first happens to PGAL; the 2 NAD+ are reduced to what; after it is phosphorulated it is then __; anough energy is being released to form 2 ADP molecules into yes; it is phosphorulated; 2 NADH+ H+; oxidized; 2 ATP molecules
Aerobic respiration; glycolysis: 2nd part- what is the end product; how many carbons are in pyruvate; how many carbon total 2 pyruvate 3 each; 6
Aerobic respiration; glycolysis: end product summary- how many aTP produced; how many ATP consumed; How many ATP gained; how many NADH+ H+ gained; how many pyruvate gained; do we still have original carbon molecules 4; 2; 2; 2; 2; yes
Aerobic respiration; glycolysis: end product summary- the 2 NADH + H+ formed are transported to what next; the electron transport system;
Aerobic respiration; glycolysis: what two carbons of glucose have been fosphorulated, the 1st and 6th;
Aerobic respiration: transition reaction prior to the krebs cycle: why does pyruvic acid enter the krebs cycle; for processing and energy release;
Aerobic respiration; glycolysis: what is the next step after glycolysis in aerobic respiration; what is transition reaction; for pyruvate to be dealt with in transition reaction; it prepares pyruvate to enter the Kreb's cycle as acetyl;
Aerobic respiration: transition reaction prior to the krebs cycle: where in cell does transition reaction take place; what is initial substrate; 2 pyruvate molecules each 3 carbons in length is de___ & ___; cell membrane; the 2 pyryvate from the end product of glycolysis; decarboxylated and oxidized;
Aerobic respiration: transition reaction prior to the krebs cycle: in decorboxylation what is pulled off of the pyruvate; what happens in oxidation; so NAD+ is reduced to what; what is added to each pyruvate; what is end products; how many carbons in end 2 CO2 molecules; 4 hydrogen atoms pulled off the 2 pyruvate; NADH + H+; coenzyme A; 2 acetyl-CoA; 2 each so 4 total (loss of 2)
Aerobic respiration: transition reaction prior to the krebs cycle: summary- so 2 NADH + H+ produce what; 2 C02 molecules that are pulled off and that is waste and 2 Acetyl-CoA (these have a 2 carbon backbone a piece)
aerobic respiration: what is after transition reaction krebs cycle
aerobic respiration: krebs cycle: what is the initial substrate that it starts with; how many carbons are in the acetyl-CoA; so how many original carbons from glucose do we have; 2 Acetyl-CoA; 2 each so 4 total; 4;
aerobic respiration: krebs cycle: when the 2 acetyl-CoA molecules enter what does the 2-carbon acetyl group immediately bind with; the binding of these 2 form what; how many carbons does citric acid have each of the 2 acetyl group bind to one 4-carbon oxaloacetate molecule; 2 citric acid molecules; 6;
aerobic respiration: krebs cycle: so when the 2 acetyle groups bind with the 4 carbon oxaloacetate molecules what is released fr om the acetyl group; where does krebs cycle take place; the coenzyme A; along cell membrane;
aerobic respiration: krebs cycle: since there are 2 citrate at end of combo from acetyl and oxaloacettic how many carbons total with two added; how many carbons are the original from glucose; what is next step after citrate formation 12 C; 4 (2 in each citrate molecule); decarboxilation of citrate
aerobic respiration: krebs cycle: when decarboxilation of the citrate occurs how many carbon molecules are lost; what happens when the the citrate is oxidized; so what happens to the NAD molecules 4 carbon molecules from the citric acid; it gives of hydrogen atoms; they pick up 4 hydrogen atoms forming NADH+ H+
aerobic respiration: krebs cycle: enough energy is released to form what; how are the 2 ATP formed; so after citrate is decarboxylated and oxidized what is formed; 2 ATP molecules; with combo of ADP and inorganic phosphate; 2 succinate;
aerobic respiration: krebs cycle: how many carbons do teh 2 succinate have; why is succinate firther oxidized; what is the coenzyme used for succinate 4 each so 8 total;b/c it contains some hydrogen atoms still; FAD
aerobic respiration: krebs cycle: how many FAD molecules are pick up 4 hydrogen atoms; when FAD picks up hydrogen atoms what does this form; what happens to the @ NAD+; what is the end result of the succinate; 2; 2 FADh2; they are reduced as well; 2 oxaloacetate molecules;
aerobic respiration: krebs cycle: with the end result of 2 xoalocetate this can be used how; when is original glucose completely catabolized; through the cycle over and over again; when succinate turms into oxaloacetate;
aerobic respiration: krebs cycle: remember all of these reactions are ___; enzymatic reactions
aerobic respiration: krebs cycle: summary- how many CO@ molecules formed; what is waste; how many ATP are gained; how many NADH + H+ are formed; where are the NADH + H+ sent to; 4 ;c02 molecules; 2; 6; the electron transport system
aerobic respiration: krebs cycle: summary- why are the 6 NADH + H+ sent to the electron transport system; how many FADH2 is formed; where is FADH2 sent so they can be utilized for ATP elsewhere; 2; electron transport system as well
aerobic respiration: krebs cycle:
coenzyme A is a vit. ___ derivative vit B
aerobic respiration: ETS: aka; how does it get its eletrons from reduced carriers NADH and FADH2; electron transport system; these reduced carriers are generated by glycolysis and the krebs cycle;
aerobic respiration: ETS: how many NADH + H+ molecules were produced from glycolysis; how many NADH + H+ molecules were produced from transition reaction; how many NADH + H+ molecules were produced from krebs cycle; 2; 2; 6 and 2 FADH2 molecules;
aerobic respiration: ETS: location; what are the initial substrates from 1 glucose molecule cell membrane; 10 NADH + H+ and 2 FADH2 molecules (these are all the ones sent from glycolysis, transition reaction and Kreb's cycle)
aerobic respiration: ETS: def of chemiosmosis; hydorgen ions are pumped outside the cytosol between cell ___ and cell ___; what kind of concentration gradient does this create a process where hydrogen ions are pumped across a cell membrane to form a hydrogen ion gradient; membrane and wall; higher one in extracellular fluid then next to cell membrane and cytosol;
aerobic respiration: ETS: what molecules process the electrons from teh hydrogen atoms; where are cytochromes located; what are components of hyodrogen atom; so what portion of hydrogen atom does cytochromes process the cytochromes; in cell membrane; one proton and one electron; the elctron
aerobic respiration: ETS: the cytochromes also play a role in pumping what; hydrogen ions (protons across the membrane)
aerobic respiration: ETS: starting with one NADH molecule- what happens as it approaches the cell membrane; when electrons are cleaved off what is released; where do the protons go when they are released; an enzymatic reaction occurs were the pair of electrons are cleaved off molecule; ionized NAD; up to cell mebrane waiting to be pumped across;
aerobic respiration: ETS: starting with one NADH molecule- once electrons are given up by the NADH molecule what happens to coenzyme; electrons go to 1st what; 1st cytochrome pumps protons across what into what it is recycled and used again for cellular respiration; cytochrome; cell membrane the extra cellular fluid;
protons aka hydrogen ions
aerobic respiration: ETS: starting with one NADH molecule- so as the protons bind to first cytochrome it is __; after it is reduced it is what reduced; oxidized
when anything is reduced (gained electrons) it has to be what; this is aka oxidized; redux
aerobic respiration: ETS: starting with one NADH molecule- after 1st cytochrome what does next one do; how many sets of chromosomes does this process go through; the last cytochrome gives up the pair of electrons to what molecule repeat process; 5 sets; oxygen
aerobic respiration: ETS: starting with one NADH molecule- so cytochrome becomes reduced when it binds to ____; it becomes oxidized when it released what hydrogen ion; hydrogen ions
aerobic respiration: ETS: starting with one NADH molecule- what happens when the pair of electrons bind to 02; is the oxygen molecule neg. or pos. charged; the O2 binds to protons then to form what; the O2 becomes ionized; neg; H2O
aerobic respiration: ETS:starting with one NADH molecule- so hydrogen ions are pumped from __cellular fluid to __cellular fluid; what is the final electron acceptor here; how much ATP is released from 1 NADH;how much from 1 FADH2;so 1 glucose=__ATP in ETS intracellular to extra cellular fluid; oxygen; 3 ATP; 2 ATP; 34 ATP
aerobic respiration: ETS: starting with one NADH molecule- where is there an excess of protons; where do these excess protons go through; protons can move quickly through the pump with the help of what enzyme; this pumps out __ in the extra cellular fluid; the ATP pump; ATP synthase; ATP;
aerobic respiration: ETS: starting with one NADH molecule- why does FADH2 only produce 2 ATP instead of 3 like NADH; b/c it is unable to bind to the 1st cytochrome
aerobic respiration: summary of ATP formation: glycolysis forms how many ATP; how many NADH + H+ are sent to ETs; transition reaction forms how much ATP; how many NADH + H+ are sent to ETS; Kreb's cycle forms how many ATP; 2 ATP; 2; 0 atp; 2 sent to ETS; 2 ATP
aerobic respiration: summary of ATP formation: KRebs cycle sends how many NADH + H+ to ETS; what else does kreb's cycle send to ETS; ETS produces how many atp;one glucose molecules yields a total of __ ATP 6; 2 FADHs; 34; 38
aerobic respiration: what is the only process that uses the carrier enzyme FADH the krebs cycle
aerobic respiration: ETS: as transport carriers shuttle electrons what happens with the protons; they are actively moved from the cytoplasm to to the periplasmic space between the membrane and cell wall;
other carb energy sources: disaccharides and polysaccharides need to first be hydrolized into what; monosaccarides are chemically _____ before they can enter glycolisis are various starting points; carbs always enter aerobic respiration where monosaccarides; modified by addition of a phosphate ; in glycolysis
proteins as energy source: proteins are long chains of ___; long chains of polypeptides are aka; polypeptides cannot enter___ the way they are; what is 1st step in preparing polypeptides to enter aerobic respiration polypeptides; amino acids; aerobic respiration processes;
proteins as energy source: diagramming generic amino acid- what is carbon in center called;proteins as energy source: what is region to bottom of central carbon called; what is NH2 called; central carbon; what is COOH on right side called; carboxyl group; variable region; amino group;
proteins as energy source: what is first step in getting protein ready for aerobic respiration; first the ___ group is removed from the amino acid; by what reaction is the amino group removed; where does the amino group go; what happens w/ rest of AA; deamination; amino group; and enzymatic reaction; off to synthesize other amino acids; this deaminated portion enters the carbohydrate pathway;
proteins as energy source: so the deaminated portion enters what part of the carbohydrate chain; this depends on the carbon backbone of the molecule (2 or 3)
energy from fats: a fat molecule is aka; what first takes place to break down larger molecule; hydrolysis breaks down larger molecule to what; triglyceride; hydrolysis; smaller molecules;
energy from fat: so when a triglyceride is hydrolysized it breaks into what molecules; what is the glycerol made of; how many carbons does glycerol have; glycerol can enter carb pathway where glycerol and 3 fatty acids; carbon hydrogen and oxygen; 3 carbons; as a 3C molecule in glycolysis
energy from fats: the 3 fatty acids are made of long ___ chains; the fatty have to be further processed by what reaction; def of beta oxidation reaction; once broken down into 2 carbon fragments where does this enter into carb pathway hydrocarbon chains; beta oxidation; breaking down fatty acids into 2 carbon fragments; acetyl
energy from fats: fatty acids can produce more ATP than carbs is this true yes
anaerobic respiration: what is the difference in the final electron acceptor; do these bacteria use glycolysis, krebs cycle, ets, transition reaction?; in that it utilizes oxygen containing ions rather than free oxygen as the final electron acceptor; yes
anaerobic respiration: give example of electron acceptor; give example of bacteria that is a nitrite producer; sulfite ions produce what; nitrate ion plus the electron acceptor equal nitrite or sulfite ions; E. coli; hydrogen sulfide -rotten egg smell
fermentation: fermentation produces ATP in the absence of what; what carbohydrate process does fermentation always follow after; def of fermentation; do fermentative reactions produce ATP; cellular respiration; glycolysis; the incomplete oxidation of glucose or other carbs in the absence of oxygen; no;
fermentation: fermentation takes the 2 NADH molecules produced in glycolysis and does what with them; do transition reaction, krebs cycle, ets occur in a cell using fermentation?; consumes them and releases ionized NAD; no;
fermentation: purpose- regeneration ionized __; allows glycolysis to continue by doing what NAD; consuming end products;
fermentation: using streptococcus lactis- this bacteria uses fermentation and glycolysis to produce what; the 2 pyruvic acid molecules from glycolysis are used as __ acceptor; what is end product here ATP; electron; 2 lactic acid molecules (pyruvic reduced state)
glycolysis, transition reaction, krebs cycle and ets is called akak the carbohydrate pathway
fermentation: the only way a cell using fermentation can survive and produce ATP is by what; glycolysis;
fermentation: ex: yeast cells- first what occurs; they fermentation reaction here goes through how many steps; what is end product; what is substrate after pyruvic acids; 2 acetaldehyde molecules are reduced and form what ; what is final electron acceptor glycolysis; 2; alcohol; 2 acetaldehyde; ethanol; ethanol
cellular respiration in eukaryotic cells- protozoa, algae and fungi-where is glycolysis located; where is fermentation reactions; where do transition reactions or krebs cycle located; where is ETS located; in cytosol; in cytosol; in matrix of mictochondrion; in cristae of mitochondrion;
def spontanious mutation
def induced mutation
def mutagen
def carcinogen
def ames test
def conjugated
def transformation
def transduction
def sex pilus (conjugation pilus)
Genoeme: def; most of the genome exists in what form; genomes of cells are composed of what; each person has a unique __ this is the sum total of genetic material of a cell; chromosomes; DNA (in viruses it is RNA; genome
chromosome: def; what is eukaryote chromosome like; what is prokaryote chromosome like; a discrete cellular structure composed of a neatly packaged DNA molecule; a DNA molecule tightly wound around histome proteins; it is condensed into a packet like histone proteins
chromosomes: eukaryote oens found where;how many strands of chromosome do bacteria have in nucleus; single double stranded
chromosomes: they contain baisc information packets called ___; genes;
genes: def; where is info for cell function found; what does it have to make protein or RNA; the fundamental unit of heredity responsible for a given trait in an organism; in the gene; a code;
genes: what are the 3 categories; structural genes code for what; regulatory genes control what; the sum of all these types of genes is the genetic ___; strutural genes; regulatory genes, genes that code for RNA; proteins; gene expression; makeup
genes: the genetic makeup is aka; the phenotype can change depending on what; phenotype; which henes are turned on or expressed
where is dna found in prokaryote; where is dna found in the eukaryote; where is dna found in a virus chromosome in nucleus, mitocondria, chloroplast, plasmids ;chromosome and plasmids; core of and capsid
bacteria chromosomes: most bacteria have how many single circular double stranded chromosomes; the chromosome of bacterial cell takes up how much space of cell; 2; 1/3rd
DNA code: who discovered DNA and when; what type of acid is DNA; DNA consists of 2 strands combined to form what; james watson and francis crick 1953; nucleic acid; a double helix;
DNA structure: how many strands does it have; the strands are antiparralel what does that mean; what is the basic unit of DNA; 2 (double); one side of the helix runs opposite direction of the other strand; the nucleotide;
DNA- nucleotide: what is it made up of; how many types of DNA nucleotides are there; what is the backbone of DNA; what attaches to the deoxyribose; how many nitrogenous bases are there; name the nitrogenous bases phosphate,deoxyribose sugar and nitrogen base; 4 types; the phosphate group and deoxyribose groups; nitrogenous bases; 4; guanine, cytosine, adenine, thymine
dna nucleotide: each deoxyribose bonds covalently with how many phosphates; so the bonds of deoxyribose are either to the what 2 carbons; how to the nitrogen bases pair up; A and T make __ hydrogen bonds; G& C make __ hydrogen bonds; 2; 3 prime or five prime; AT and GC; double; triple;
DNA- nucleotide- so the bases are joined by what; what base pairs are most stable, why; the hydrogen bond; CG b/c they have a triple hydrogen bond
DNA structure: so one strand runs from a 5 prime to __ prime orientation and the other one runs from a 3 prime to a __ prime 3 and 5;
nitrogenous bases: so if there are a large number of AT bases why does this present a problem; this is an area that is weaker making it easier to break apart;
DNA structure: the arrangment of nitrogenous bases are important for what 2 reasons; how does maintain the code; how does it provide variety maintainance of codings for replication and providing vareity; consistant base pairs guarentees that code will be retained during cell growth; this has info the produce RNA and thus phenotype of the cell;
DNA replication- how nucleotides are added: replication requires how many diff. enzymes 30;
DNa replication: def this is the process of codes being duplicated and passed to offspring
DNa replication- enzymes: what does helicase do; what does primase do; what does DNA polymerase III do; what does DNA polymerase I do; what does ligase do; what doe gyrase do unzips DNA helix; synthesizes an RNA primer; adding bases to the new DNA chain nad proof reads chain for mistakes; removes primer, closes gaps, repaires mitchmatching; final binding of errors; supercoils it
DNA replication: what is 1st step; when the hydrogen bonds are unzipped between base pairs what happens; how are two new strands synthesized to uncoil the parent DNA molecule; the strands are separated and the nucleotides are exposed; by attaching the correct complementary nucleotides to each single stranded template
DNA replication- each daughter molecule will be identical to what; what is the main enzyme in replication; the parent in composition; DNA polymerase III
replication- DNA polymerase II- can it begin a synthesizing a chain of nucleotides; it can only continue to add nucleotides how; no; to an already existing chain and in only one direction;
DNA- replication: daughter molecule has one ore two completely new strands; def of origin of repliation; why is it called semiconservative replication one; site that serves as the place where replication will be initiated; because only one strand is completely new the other is the parent strand;
DNA- replication: replication begins at what base pair rich section; helicase untwists what; helicase breaks what; the untwisting and break of hydrogen bonds creats what AT; the helix; hydrogen bonds; 2 replication forks
DNA- replication: since the area of replication is AT rich it requires less or more energy to separate strands the GT bond; less energy;
DNA- replication: primase- what is formed at teh origin of replication; what recognizes the RNA primers; an RNA primer; DNA polymerase III;
DNA- replication: DNA polymerase III- this adds what to parent strand of DNA; what is a leading strand; def lagging strand; lagging strand AKA; DNA nucleotidesthis is formed as a continuous complete strand moving toward the replication fork; not sunthesized continuously and moves away from the replication form; okazaki fragments;
DNA- replication: when is the lagging strand completed; what 2 enzymes can make repairs; when the enzyme fills spaces between the okazaki fragments with correct nucleotides; DNA polymerase I and III
DNA- replication: replication fork is located where; lagging stran goes to or away from replication fork; leading strand goes to or away from replication fork; in the middle in between the DNA polymerase III;towards; away
DNA replication: why does it occur before binary fission; also in cells able to produce endo spores. so daughter cell would have replicated chromosome;
central dogma: what is it; what is new in recent years in regards to RNA; that genetic info typically flows from DNA to RNA to protein;some RNAs are now used to regulate gene function also many of genetic malfunctions that cause human disease are found in these regulatory RNA segments
DNA is used to synthesis what; what is it called when DNA 1st synthesizes RNA; information contained in RNA is used to produce what; RNA producing protein is called what; RNA; transcription; protein; translation;
messenger RNA: def; its synthesis is similar to what other synthesis; the message of transcribed strand is later read in a seriers of ___; the triplets are aka; this is a complementary strand to what; each codon codes for what this is a readable copy of DNA, a transcript of a structural gene or genes in the DNA; the synthesis of the leading strand during DNA replication; triplets; codons; dna; amino acids
transfer RNA: this is a copy of what; a specific region of DNA;
when a triplet code is transcribed and translated it dictates the type and order of what amino acids in a polypeptide chain (protein chain)
a proteins primary structure is determined by what the order and type of amino acids in the chain
the DNA molecule is a continuous chain of base pairs, but must be interpreted how; each triplet is copied to what; the mRNA codons translate into what; what is the ration of base pairs to amino acids in groups of three base pairs; an mRNA codon; one amino acid; 3:1
RNA: what is the full name of it; what base does it not contain; what is the base that it does contain; uracil pairs with what; what is the sugar in RNA; what is the sugar in DNA ribonucleic acid; thymine; uracil; adenine; ribose; deoxyribose
what is the key to translation transfer RNA
transfer RNA: this contains sequences of bases that form ___ bonds with what; since it forms hydrogen bonds with same section of tRNA strand what happens hydrogen bonds with complementary sections of the same tRNA strand; the molecule bends back on itself into hairpin loops (looks like a key)
tRNA: what is the final structure called after the bending hairpin loops; this transpates the RNA language into what language; what is the bottom loop of the cloverleaf exposing the triplet called; cloverleaf; the protein language; the anticodon
tRNA: what id the anticodon; what is the binding site on teh opposite end of the molecule for; thisdesignates the specificity of the tRNA and complements mRNAs condons; the amino acid that is specific for that anticodon
tRNA: for each of the 20 amino acids there is at least how mant specialized type of tRNA to carry it ; where does the tranfer of genitic information form mRNA to tRNA take place one; at the ribosome
the ribosome: the is a moblie molecular factory for what; what is it composed of; what type of molecule is it translation; tightly packed rRNA and protein; a long polynucteotide molecule
ribosome: the interaction of proteins and rRNA creates what; prokaryotic ribosomes are considered __ s the 2 subunits of teh ribosome that engages in final translation of teh genetic code; 70s
stages of transcription: what are the 3 stages; the tranfer of genitic info into and RNA molecule is initiated by what; what does RNA polymerase do; initiation,elongation, termination; RNA polymerase; binds to DNA, unwinds it and synthesizes RNA
transcription: initiation- initiation requires RNA polymerase to recognize what on a gene; the promotor region has how many sets of DNA sequences; what is primary function of promotor region; region called the promotor region; 2; to provide a position for initial binding of RNA polymerase
transcription: initiation- RNA polymerase first begins to do what to DNA; what strand of DNA is transcribed; def of trempate strand; def of nontemplate strand; is the promotor sequence transcribes as part of the final mRNA molecule; unwind the DNA strand; the template strand; the strand the carries a message that can be translated in to a protein; serves a genetic function but not as a message for protein structure; no
transcription: what is usually the first DNA triplet; so since RNA will have uracil not thymine what is the first codon on the mRNA; def of elongation; RNA polymerase adds complementary ___ the form the single stranded mRNA TAC; AUG; the RNA polymerase moves the transcription bubble forward exposing subsequent sections of DNA; nucleotides
transcription: termination- the RNA polymerase continues transcribing until it reaches what; what is at the termination site; what is released at the termination site; the completed mRNA goes immediately to what; what happens to the DNA after this a termination site; the stop codon; the mRNA transcript; translation; it is rewound into its original configuration
what is first stage of gene expression; what is second stage of gene expression transcription; translation
tranlation: all of the elements needed to synthesize a protein are brought together where; what are the 5 stages of translation on the ribosomes; initiation, elongation, termination, protein folding and protein processing
translation: where is the site of this process; prokaryotic ribosome
ribosome: how many subunits does it have; what is the small subunit for; the large subunit has how many sites; what are the names for the 3 sites in the large subunit; 2; binding site for mRNA; 3; E,P,A
ribosome: what does site E do; what does site P do; what does site A do exit site for tRNA molecule; peptidyl site for where amino acid is transferred from tRNA to growing polypeptide chain; acceptor site for tRNA molecule to bind to its anticodon to the codon on the mRNA strand
translation: when the mRNA molecule leaves the DNA transcription site where is it transported; the small subunit of the ribosome what; the ribome scans the mRNA by moving how; when does translation begin to the ribosome; the 5 prime end of the mRNA; in a 5 prime 3 prime direction; when the ribosome encounters a start codon
translation: what is usually the start codon; when mRNA is in place of the ribosome what enters with their amino acids; what meets with the mRNA codon site; what happens when the tRNA binds with the mRNA; AUG; tRNA in teh acceptor site; tRNA anticodon; amino acid is released from tRNA molecule
translation: when is the tRNA molecule released from the ribosome; what guides the tRNA to meet with the mRNA; when it enters the exit site; the P and A site of the ribosome;
translation: what are the nonsense, stop or termination codons; once teh triplet code on mRNA is known what all can be known; uga, UAA, UAG; the original DNA sequance, the complementary tRNA code and the types of amino acids in protein are known
why did stop codons get naem of the nonsense codons; because no tRNA can bind to them
translation: what happens when the stop codon is reached; what breaks the bond between the tRNA and polypeptide chain; what does polypeptide chain get reconfigured into once out in cytosol messenger RNa is released from the ribosome; a special enzyme breaks the bond between the final tRNA and the finished polypeptide chain; a protein
codons code for what; amino acids
genetic regulation of protein synthesis and metabolism: why are enzymes regulated; enzymes are produced when; why are enzymes produced only as needed; what is a major form of gene regulation in prokaryotes to ensure that genes are active only when their products are required; as they are needed; to prevent the waste of energy and materials; opserons
operons: def; what are the categories of operons; the category of and aperon is determined by what; a specific set of genes whose function is coordiated as a single unit; induced or repressible; by how it is affected by the environment within the cell;
operon: what does induced mena; what does repressed operon mena; the operon it turned on by the substrate of the enzyme for which the structural genes code; they contain genes coding for anabolic enzymes and several genes in a series or thurned off by the product synthesized by the enzyme
the lastose operon: regulates metabolism for what; what are the 3 important features in this; what is the regulator; what are the 2 components of the control locus; the E. coli; the regulator,control locus and structural locus; a gene that codes for a protein capable of repressing the operon; promotor and operator
lactose operon: control locus- what does promotor do; what happens it the repressor protein is inhibited; binds RNA polymerase (beginning component of operon); a sequence that acts as an on/off switch for transcription; the operator is on;
lactose operon: what is the structural locus made up of 3 gens each coding for a different enzyme needed to catabolize lactose
lactose operon: operon off- in the adsence of lactose a repressor protein attaches to what; when the repressor protein attaches to the operator what happens; suppression of a transcription prevents what the operator of the operon; this locks the operator; unnecessary synthesis of enzymes for processing lactose
lactose operon: operon on- how does lactose become a genetic inducer; the RNA polymerase can now do what; the enzymes produced from translation do what to lactose; what are the 3 enzymes produced; by attaching to the repressor which loses its grip and falls away; bind to the promotor and initiate transcription; reactions; permease, beta-galactosidose; transacetylase
lactose operon: if lactose is added to cells environment it triggers what the opeeron to turn on
lactose operon: it only operates in the absense of what glucose;
mutation means the __ sequence is altered; most times this is what; what fixes the mutations nucleotide; repaired; enzymes
def spontaneous mutation random changed in the DNA arising from errors in replication
def induced mutation results from eposure to known mutation
repairing mutation: dna that has been damaged by UV radiation- how is it repaired; what light sensitive enzyme does the repair by photoactivation or light repair; DNA photlyase
repairs of mutation: excision repair- def; mutations can be excised by a series of enzymes that remove the incorrect bases and add the correct ones
mutations- the ames test- def ; any chemical that is capable of mutating bacterial DNA can mutate what a rapids screening test that detects chemicals with carcinogenic potential; mammalian DNA
AMES test: procudure- what culture is inoculated on 2 agar plates; what are the agar plates; what happens with control plate; what happens with test plate salmonella bacteria that is histine -; histine free medium; it is incubated and contains no test chemical just the organism; contains organism and chemical and then is incubated
Ames test: test plate after incubation will have colonies after incubation will have ben mutated and now will form what; what will control plate look like after incubation histidine; there will not be colonies (maybe a few from spontanious mutations)
ames test: what is end purpose the chemical will determined to be a mutigen capable of mutating human DNA
def of carcinogens chemicals the produce an increased incidence of back mutation
DNA recombination: def; the recipient organism now has how many types of DNA; what is the end result; what is new strain called when one bacterium donates DNA to another bacterium; 2; new strain differernt from donar and recipient; recombinant organsim
transmission of genetic material in bacteria: this usually involves what type of DNA; plasmids can replicate independently of what; what are the 3 types of genetic recombination; the plasmids or chromosomal fragments; the bacterial chromosome; conjugation, transformation, transduction
DNA recombination: conjugation- def; can gran + or gram - conjugate; is thsi exchange direct of indirect a mode of genetic exchange in which a plasmid or other genetic material is transferred by a donor to a recipient via a direct connection; both; direct
DNA recombination: conjugation involving F factor transfer- the pilus of the donar cell attaches to what; what is donor called; what does F stand for; what is recipient called; the receptor on the recipient cell and draws the 2 cells together; f+ cell- it has F factor; fertility factor the plasmid in F+; F- because it lacks that F factor
DNA recombination: conjugation involving F factor transfer- what produces the pilus the F+ or F-; the cells have to be very similar why; why does the F+ shorten the pilus between the 2 cells; F+; in order for them to attach to eachother; so the connection can be stablelized
DNA recombination: conjugation involving F factor transfer- why does a pore form between the F+ amd F- cell; what happens with the F+ factor; so the cytosol is continuous between the 2 cells; one strand unwinds and crosses through the pilus and enters the F- cell;
DNA recombination: conjugation involving F factor transfer- what happens when F factor enters F- cell; what happens to the strand left over in the F+ cell; it is replicated; that is also replicated;
DNA recombination: conjugation involving F factor transfer- at the end both cells are F+ orF-; the F factor (plasmid) is not essential for ife of cell but it can do what F+ - capable of conjegating with similar cells; account for pathogenic charecteristics
DNA recombination: conjugation involving Hfr transfer- what does Hfr stand for; what is an Hfr cell; is this common or rare; high frequancy transfer rate; one that had an F factor in its cytosol but F factor was combined into the cells chromosome; rare
DNA recombination: conjugation involving Hfr transfer- first the Hfr cell develops a what; the pilus connects to what type of cell; the Hfr cell shortens pilus just like F factor transfer but then enzymes do what pilus; and F - cell; effect area on chromosome;
DNA recombination: conjugation involving Hfr transfer- why do the enzymes have to work on the chromosome; do you get partial or full copy of the chromosome occur so transmission of part of the chromosome (just a section) can occur; just part
DNA recombination: conjugation involving Hfr transfer- now the F- minus cell gained genetic material it is called what; why is it still considered an F - cell a recombinent F - cell; b/c it did not gain all of the genetic material
DNA recombination: biomedical importance of conjugation: F factors can bear genes that are resistant to what; so one bacteria can have multiple what; what is the name for plasmids that are resistant; antibiotics; resistance to antibiotics; R plasmids;
Griffiths expirement in transformation: what was it; when did it occcur; one strain produced a what; the capsulated strain caused what; would the uncapsulated strain produce pna; it was the first to show transformation occurring between 2 diffent strains of Strep. pneumoniae; 1928; capsule; pneumonia in animals; no;
Griffiths expirement in transformation: process- the smooth strain was given to what; what happened to mice with smooth (capsulated strain) strain; what was done with rough (uncapsulated strain); next the scientist killed what strain before giving to mice mice; they died; the mice lived; the smooth strain
Griffiths expirement in transformation: process- did the mice live with killed smooth strain; then the rough strain was combined with heat killed smooth strain and gave it to mice- did the mice die or live; what did this prove yes; they died; bacterial DNA is released in fragments from dead bacterial cells and the other cells (rough strain) incorportated fragments into their cells and created capsules themselfs
Griffiths expirement in transformation: this proved what; def of compenent cells ; that DNA released from a killed cell can be acquired by a live cell; ce;;s capable of accepting genetic material;
DNA recombination: generalized transduction: what is a bacterialphage; the phage does what; in replication on the virus accidently does what; cell A lyses and releases what a virus that serves as a carrier of bacterial DNA from one bacterial cell to another of the same species; it injects the viral DNA to cell A and the virus is reproduced; incorperates a segment of bacterial DNA by mistake into virus particles;alteredphages
DNA recombination: generalized transduction: the mature altered phages penetrates other host cells and injects DNA from what; what does cell B do with this DNA; what happens with defective virus cell A rather than the viral nucleic acid; it recombines with its own DNA; it is unable to cmplete lytic cycle
basic elements and applications in genetic engineering: what are they tools and technics, recombinant DNA technology, biochemical products of recombinant DNA technology, genetically modified organisms, genetic treatments, genome analysis
recombinant DNA technology: def; what is the cloning vector; the cloning vector inserts what into cloning host cell; why is this important; removes genetic material from one organism and combines it with that of a different organism; the plasmid or virus; the DNA; human insulin is produced by E. Coli
protein products from recombinant DNA tech: purpsoe of interferons; interleukins; human growth hormone; hep B vaccine; used to treat cancerm MS, viral infections like hepatitis; regulates immune function of WBC and cancer tx; dwarfism; used for Type B meningitis
dna replication:okazaki fragments are formed in the lagging strand yes or no; do these fragments run in a 3' to 5' orientation or a 5' to 3 orientation yes; 3- to 5' orientation
high frequency recobination cells (HFR cells) arine from the f- or f+ cell when the R plasmid is incorporated into the bacterial chromosome the F-
the leading strand during DNA replication orients to the 5' to 3' direction or to the 3' to 5' direction the 5' to 3' direction
which group of viruses; ones with double stranded DNA as their genetic information or ones with single stranded RNA as genetic material; is more likely to repair its genetical material in a eukaryotic host cell double stranded DNA virus
Created by: jmkettel
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