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The Cell Cycle
| Question | Answer |
|---|---|
| Name the four to five cyclin-cdk complexes | 1. mid G1 2. late G1 3/4. early and late S phase 5. mitotic |
| How to cyclin-cdk complexes work? | They phosphorylate key substrates |
| name the two ubiquitination complexes | 1. SCF: works in Cdc34 pathway to regulate entry of cells into S 2. APC/C: regulates entry into anaphase and telophase |
| What do ubiquitination complexes typically do? | They target certain proteins for degradation |
| Cyclin CDK activation:1 What initial complex binds? | Inactive ATP bound CDK and cyclin |
| Cyclin CDK activation:2 What structural changes occur with binding? | T-loop from cdk crosses into the cyclin |
| Cyclin CDK activation:3 What last reaction occurs? | Cdk-activating kinase (CAK) phosphorylates t-loop. Now it is fully active |
| Name two ways in which the cdk can be inactivated. Name the main proponent of inactivation | 1. Wee1 Kinase phosphorylates 2. p27(CKI) binds to entire complex, blocking active site |
| How can the effects of Wee1 be reversed? | Cdc25 phosphatase |
| How can Cdc25 become activated? | It gets phosphorylated by an active Mitotic(M)-Cdk |
| How is the activity of p27 reversed (generally CKI)? | It gets phosphorylated by a C-cdk kinase, then ubiquitinized by SCF complex |
| Why would E2F be inactive? | It is bounnd to an active Rb |
| How is E2F activated? | Cyclin-Cdk4 phosphorylates Rb |
| When can Cyclin-Cdk4 be active to phosphorylate Rb? | When it is not bound to p16 |
| What is the main function of S-Cdk? | They activate the formation of preinitiation complex and initiation |
| What is the role of M-Cdk with respect to DNA replication? | It activates the segregation the two newly created strands of chromosomes |
| What are the two main steps of DNA replication? | 1. Formation of prereplicative complex 2. The firing of the origin |
| What is significant about the proteins in the prereplicative complex? | They are all unphosphorylated in G1 |
| What is significant about the firing of the origin? | Various components (incl. MCM cdc6,cdt1...) are degraded or inactivated |
| When can prereplicative complexes form? | Late G1 |
| When does the firing of the origin occur? | Beginning of S phase |
| What does prophase-MCdk do? | It stimulates the coiling of chromosomes by condensin, therfore creating condensed chromosomes. |
| Name another function of prophase-MCdk after condensing chromosomes | It phosphorylates the microtubule associated proteins that stimulate the formation of the mitotic spindle apparatus |
| Name one last function of prophase-MCdk after spindle is phosphorylated | The centriole proteins and other kinases are phosphorylated. |
| On what is centriole replication dependent? | It is dependent on G1/S cyclin cdks and the separation of daughter chromosomes by mitotic cyclin cdks |
| In what phase does separation occur? | Prophase |
| What is the main function of prometaphase-MCdk? | Phosphorylates several nuclear envelope proteins for the breakdown of nuclear pore complexes |
| How is the nuclear envelope broken down? | prometaphase-Mcdk phosphorylates lamins |
| How is the nuclear envelope formed? | Specific phosphatases induce the reformation of nuclear lamina in telophase |
| What ring structure holds chromatid together? | Smc1 and Smc3 |
| How is the Smc1 and Smc3 ring held together? | Metaphase-cohesin |
| How is APC/C activated? | Bound to Cdc20 |
| What is separase like in its inactive state? | It is bound to securin |
| How is separase activated? | Active APC/C ubiqutinates the securin attached to separase |
| What is the role of an active separase? | It cleaves cohesion complexes that hold sister chromatids together, therefore allowing them to move to opposite poles |
| What happens to mitotic cyclins in anaphase B and telophase | Active APC/C complexes ubiquitinate the cyclin portion, which leads to the degradations of the m-cyclin in proteasome |
| In order to degrade mitotic cyclins, APC/C needs to associate with _____ | cdh1 |
| In anaphase B, the m-cdk are inactivated. What happens next? | phosphatases reverse reactions carried out by m-cdk, allowing cells to go through anaphase and telophase |
| What are the locations of the three checkpoints? | 1. G2/M - enter mitosis 2. Metaphase/Anaphase - trigger anaphase and proceed to cytokinesis 3. End of G1 - enter cell cycle and S phase |