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unit 1: chem of life
ap bio unit one
| Term | Definition |
|---|---|
| covalent bonds | -sharing of electrons between two atoms -forms molecules and compounds -has single, double, and triple bonds -nonpolar and polar |
| single covalent bond | -1 pair of shared electrons |
| double covalent bond | -2 pairs of shared electrons |
| triple covalent bond | -3 pairs of shared electrons |
| nonpolar covalent bond | -electrons are shared equally |
| polar covalent bond | -electrons not shared equally -leads to partial charges |
| ionic bonds | -forms ionic compounds and salts -transfer of one atom to another forms ions -forms by attraction of anion and cation |
| anion | -ion with negative charge |
| cation | -ion with positive charge |
| hydrogen bonding | -partial positive atom attracted to partial negative atom in polar covalent bonds -hydrogen always has partial negative charge -an intermolecular bond |
| intermolecular bond | -bonds between molecules -hydrogen bonds to partial negative atom because of unequal sharing -polar covalent bonds |
| dehydration reaction | -bond two monomers with loss of H2O -OH of one bonds to H of another -releases H2O -A+B=AB+H2O |
| hydrolysis reaction | -breaks bonds by adding H2O -H bonds to one monomer, OH bonds to another -AB+H2O=A+B |
| organic chemistry | -study of compounds involving covalently bonded carbon -carbon has 4 valence electrons |
| organic compounds | -compounds that contain carbon and hydrogen -most have hydrogen, oxygen, and nitrogen |
| carbon bonds | -can form single, double, and triple covalent bonds -a single carbon can form 4 bonds (leads to chains) -bonds affect length of chains and shape of molecule |
| carbon chains | -carbon forms bonds with other carbons -form skeletons of most organic molecules -many organic molecules contain hydrocarbons |
| hydrocarbons | -in most organic molecules -consist of carbon and hydrogen -simple frame for more complex molecules |
| skeletons | -formed by carbon chains -vary in: -length -branching -double bond position -presence of rings -variations lead to macromolecules |
| functional groups | -chemical groups attached to carbon chains to participate in chemical reactions -Carbonyl -Amino -Methyl -Hydroxyl -Carboxyl -Sulfhydryl -Phosphate |
| carboxyl group | -Oxygen double bonded to a Carbon |
| amino group | -Nitrogen bonded to a Carbon -two Hydrogens bonded to the Nitrogen |
| methyl group | -three Hydrogens bonded to a Carbon |
| hydroxyl group | -an Oxygen and Hydrogen both bonded to a Carbon |
| carboxyl group | -Oxygen double bonded to a Carbon -Carbon also bonded to a Hydrogen and Oxygen |
| sulfhydryl group | -Sulfur and Hydrogen both bonded to a Carbon |
| phosphate group | -Oxygen bonded to a Carbon -Phosphate bonded to the Oxygen -Phosphate has three Oxygens -one is double bonded -other two have a negative charge |
| polymers in macromolecules | -chain-like macromolecules of repeating units that are covalently bond together |
| monomers in macromolecules | -individual repeating units that make up polymers |
| dehydration reaction | -bond of two monomers -OH of one bonds to H of another -the H2O is released -A+B=AB+H2O |
| hydrolysis reaction | -breaks bonds by adding H2O -H bonds to one monomer -OH bonds to other monomer -AB+H2O=A+B |
| Polarity | unequal sharing of electrons causes water to be polar -causes adhesion |
| Cohesion | attraction of one molecule to another molecule of the same kind -causes water to move together |
| Adhesion | clinging one one molecule to another of a different kind -causes polarity -allows water to cling to cell wall within plants and resist gravity pull |
| Hydrogen Bonds | -exist between each H2O molecule -increases cohesive forces -allows for water to transport in plants against gravity -causes surface tension |
| Capillary Action | -upward movement of water as a result of cohesion, adhesion, and surface tension -occurs when adhesion is greater than cohesion |
| Temperature Control/High Specific Heat | -resists changes in temperature as a result of hydrogen bonds -heat absorbed to break hydrogen bonds, released when bonds form -large bodies absorb heat and release during night (moderate air temp and stabilize ocean temp) -H2O in organisms resist temp |
| Evaporative Cooling/High Heat of Vaporization | -result of high specific heat -high kinetic energy molecules leave as gas -moderate earth's climate -stabilize lake and pond temperature -prevents overheat and burn of terrestrials and plants |
| Floating Ice | -H20 solidifies as it expands bc of hydrogen bonds -frozen H2O moves too slowly to break bond -marine continue to life live under ice sheets -ice eventually melts again, cycle |
| Versatile Solvent | -polar molecules attracted to ions and others to hydrogen bonds -dissolves solute |
| "Like Dissolves Like" | -water interacts with sugars/proteins containing Hydrogen and Oxygen -water will form hydrogen bonds with sugar or protein |
| Ionic Compounds | -partially negative oxygen will interact with a positive atom -partially positive hydrogen will interact with negative atom |
| lipids | -does not have a true polymer -nonpolar -not considered a macromolecule |
| three types of lipids | -fats -phospholipids -steroids |
| elements in lipids | -Carbon -Hydrogen -Oxygen -Phosphorus |
| fats | -glycerol -fatty acids |
| glycerol | -an alcohol -hydroxyl |
| fatty acids | -long carbon chains -has a carboxyl on one end -saturated and unsaturated -three fatty acids join glycerol in ester linkage |
| saturated fatty acids | -has no double bonds -more hydrogen |
| unsaturated fatty acids | -one or more double double bonds -less hydrogen |
| phospholipids | -major in cell membranes -two fatty acids to one glycerol and a phosphate -has a bilayer in H20 |
| phospholipid bilayer | -head hydrophilic -tail hydrophobic |
| steroids | -lipids with four fused rings -unique ring groups determine type |
| carbohydrates | -sugars and polymers of sugars -monosaccharides, disaccharides, and polysaccharides |
| monosaccharides | -simple sugars -multiple CH2O -most common in glucose as nutrients and fuel for cells -cellular respiration -building blocks for amino acids -monomers for disaccharides and polysaccharides |
| disaccharides | -two monosaccharides joined by covalent bonds -sucrose most common -monosaccharides are glucose and fructose -plants transfer carbs from roots to leaves in sucrose |
| polysaccharides | -polymer with many sugars joined by dehydration reaction -storage and structural polysaccharides |
| storage polysaccharides | -starch -glycogen |
| structural polysaccharides | -cellulose forms cell walls in plants -chitin forms exoskeleton of bugs/anthropods |
| elements in carbohydrates | -Carbon -Hydrogen -Oxygen |
| functional groups | -one carbonyl (C=O) -many hydroxyl (OH) |
| monomer of carbohydrates | -monosaccharide |
| polymer of carbohydrates | -polysaccharide |
| starch | -storage polysaccharide in plants |
| glycogen | -storage polysaccharide in animals -stored in liver and muscle cells |
| protein | -molecule made up of polypeptides (polymer of amino acids) -shape determines function |
| amino acids | -carboxyl and amino group -20 different proteins with unique side chains -determines unique chemical and physical aspects -side chains interact to determine shape and function |
| amino acid side chain groups | 1. nonpolar (hydrophobic) 2. polar (hydrophilic) 3. ionic/charged (hydrophilic) |
| peptide bonds | -carboxyl group bonded next to amino group |
| polypeptides | -many amino acids linked by peptide bonds -each has unique amino acid and directionality -each end is unique (N-terminus and C-terminus) -sequence of AAs determines shape (function) -R group interacts and polypeptide twists -forms protein |
| N-terminus | -one end free amino group |
| C-terminus | -one end free carboxyl group |
| five functions of proteins | 1. antibody 2. messenger 3. structural 4. enzyme 5. transport/storage |
| antibody | -a protein function -protects body from disease |
| messenger | -a protein function -transmits signals (hormones) |
| structural | -a protein function -offers structure and support |
| enzyme | -a protein function -carry chemical reactions -creates new molecules |
| transport/storage | -a protein function -binds to and carries small atoms and molecules |
| four levels of protein structures | -primary, secondary, tertiary, quaternary -all levels determine function |
| primary level | -determined by genes -dictates secondary and tertiary levels |
| secondary level | -hydrogen bonds cause it to coil and fold in polypeptide backbone |
| tertiary level | -3D folding caused by side chain interactions -reinforced by hydrophobic and disulfide bridges |
| disulfide bridges | -covalent bonds between sulfur and two cysteine monomers |
| quaternary level | -association of 2+ polypeptides -only in some proteins |
| pleated sheet | -hydrogen bonds with polypeptides side by side |
| alpha helix | -hydrogen bonds every 4th amino acid |
| elements in protein | -Carbon -Hydrogen -Oxygen -Nitrogen -Sulfur |
| formation order | -amino acid to -peptide to -polypeptide to -protein |
| elements in nucleic acids | -Carbon -Hydrogen -Oxygen -Nitrogen -Phosphorus |
| monomers of nucleic acids | -nucleotides |
| nucleic acids function | -store hereditary information -transmit hereditary information -express hereditary information |
| forms of nucleic acids | -Deoxyribonucleic Acid (DNA) -Ribonucleic Acid (RNA) |
| nucleotides | -nucleotide to polynucleotide to nucleic acid -three parts -nitrogenous base -five carbon sugar -phosphate group (each monomer has one phosphate group) |
| polymer of nucleic acids | -polynucleotide |
| nitrogenous base | -pyrimidines and purines |
| pyrimidines | -one ring with six atoms -Cytosine -Thymine (only DNA) -Uracil (only RNA) |
| purines | -two rings -six atoms on one, five on another -Adenine -Guanine |
| 5 carbon sugar | -sugar bonded to nitrogenous base -Deoxyribose and Ribose -differ in structure and function |
| sugar in DNA | -deoxyribose |
| sugar in RNA | -ribose |
| phosphate group | -phosphate group added to five carbon sugar -attaches to base -forms nucleotide |
| polynucleotides | -phosphate group links nucleotides with phosphodiester linkage -determines directionality (5' to 3') |
| sequence of bases | -unique to gene -determines Amino Acid sequence -determines protein structure |
| Deoxyribonucleic Acid (DNA) | -two polynucleotides form double helix -strands are antiparallel -held together by hydrogen bonds -Cytosine bonds to Guanine -Adenine bonds to Thymine |
| Ribonucleic Acid (RNA) | -single strand polynucleotide -varies in shape -Adenine bonds to Uracil -Cytosine bonds to Guanine |