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unit 1: chem of life

ap bio unit one

TermDefinition
covalent bonds -sharing of electrons between two atoms -forms molecules and compounds -has single, double, and triple bonds -nonpolar and polar
single covalent bond -1 pair of shared electrons
double covalent bond -2 pairs of shared electrons
triple covalent bond -3 pairs of shared electrons
nonpolar covalent bond -electrons are shared equally
polar covalent bond -electrons not shared equally -leads to partial charges
ionic bonds -forms ionic compounds and salts -transfer of one atom to another forms ions -forms by attraction of anion and cation
anion -ion with negative charge
cation -ion with positive charge
hydrogen bonding -partial positive atom attracted to partial negative atom in polar covalent bonds -hydrogen always has partial negative charge -an intermolecular bond
intermolecular bond -bonds between molecules -hydrogen bonds to partial negative atom because of unequal sharing -polar covalent bonds
dehydration reaction -bond two monomers with loss of H2O -OH of one bonds to H of another -releases H2O -A+B=AB+H2O
hydrolysis reaction -breaks bonds by adding H2O -H bonds to one monomer, OH bonds to another -AB+H2O=A+B
organic chemistry -study of compounds involving covalently bonded carbon -carbon has 4 valence electrons
organic compounds -compounds that contain carbon and hydrogen -most have hydrogen, oxygen, and nitrogen
carbon bonds -can form single, double, and triple covalent bonds -a single carbon can form 4 bonds (leads to chains) -bonds affect length of chains and shape of molecule
carbon chains -carbon forms bonds with other carbons -form skeletons of most organic molecules -many organic molecules contain hydrocarbons
hydrocarbons -in most organic molecules -consist of carbon and hydrogen -simple frame for more complex molecules
skeletons -formed by carbon chains -vary in: -length -branching -double bond position -presence of rings -variations lead to macromolecules
functional groups -chemical groups attached to carbon chains to participate in chemical reactions -Carbonyl -Amino -Methyl -Hydroxyl -Carboxyl -Sulfhydryl -Phosphate
carboxyl group -Oxygen double bonded to a Carbon
amino group -Nitrogen bonded to a Carbon -two Hydrogens bonded to the Nitrogen
methyl group -three Hydrogens bonded to a Carbon
hydroxyl group -an Oxygen and Hydrogen both bonded to a Carbon
carboxyl group -Oxygen double bonded to a Carbon -Carbon also bonded to a Hydrogen and Oxygen
sulfhydryl group -Sulfur and Hydrogen both bonded to a Carbon
phosphate group -Oxygen bonded to a Carbon -Phosphate bonded to the Oxygen -Phosphate has three Oxygens -one is double bonded -other two have a negative charge
polymers in macromolecules -chain-like macromolecules of repeating units that are covalently bond together
monomers in macromolecules -individual repeating units that make up polymers
dehydration reaction -bond of two monomers -OH of one bonds to H of another -the H2O is released -A+B=AB+H2O
hydrolysis reaction -breaks bonds by adding H2O -H bonds to one monomer -OH bonds to other monomer -AB+H2O=A+B
Polarity unequal sharing of electrons causes water to be polar -causes adhesion
Cohesion attraction of one molecule to another molecule of the same kind -causes water to move together
Adhesion clinging one one molecule to another of a different kind -causes polarity -allows water to cling to cell wall within plants and resist gravity pull
Hydrogen Bonds -exist between each H2O molecule -increases cohesive forces -allows for water to transport in plants against gravity -causes surface tension
Capillary Action -upward movement of water as a result of cohesion, adhesion, and surface tension -occurs when adhesion is greater than cohesion
Temperature Control/High Specific Heat -resists changes in temperature as a result of hydrogen bonds -heat absorbed to break hydrogen bonds, released when bonds form -large bodies absorb heat and release during night (moderate air temp and stabilize ocean temp) -H2O in organisms resist temp
Evaporative Cooling/High Heat of Vaporization -result of high specific heat -high kinetic energy molecules leave as gas -moderate earth's climate -stabilize lake and pond temperature -prevents overheat and burn of terrestrials and plants
Floating Ice -H20 solidifies as it expands bc of hydrogen bonds -frozen H2O moves too slowly to break bond -marine continue to life live under ice sheets -ice eventually melts again, cycle
Versatile Solvent -polar molecules attracted to ions and others to hydrogen bonds -dissolves solute
"Like Dissolves Like" -water interacts with sugars/proteins containing Hydrogen and Oxygen -water will form hydrogen bonds with sugar or protein
Ionic Compounds -partially negative oxygen will interact with a positive atom -partially positive hydrogen will interact with negative atom
lipids -does not have a true polymer -nonpolar -not considered a macromolecule
three types of lipids -fats -phospholipids -steroids
elements in lipids -Carbon -Hydrogen -Oxygen -Phosphorus
fats -glycerol -fatty acids
glycerol -an alcohol -hydroxyl
fatty acids -long carbon chains -has a carboxyl on one end -saturated and unsaturated -three fatty acids join glycerol in ester linkage
saturated fatty acids -has no double bonds -more hydrogen
unsaturated fatty acids -one or more double double bonds -less hydrogen
phospholipids -major in cell membranes -two fatty acids to one glycerol and a phosphate -has a bilayer in H20
phospholipid bilayer -head hydrophilic -tail hydrophobic
steroids -lipids with four fused rings -unique ring groups determine type
carbohydrates -sugars and polymers of sugars -monosaccharides, disaccharides, and polysaccharides
monosaccharides -simple sugars -multiple CH2O -most common in glucose as nutrients and fuel for cells -cellular respiration -building blocks for amino acids -monomers for disaccharides and polysaccharides
disaccharides -two monosaccharides joined by covalent bonds -sucrose most common -monosaccharides are glucose and fructose -plants transfer carbs from roots to leaves in sucrose
polysaccharides -polymer with many sugars joined by dehydration reaction -storage and structural polysaccharides
storage polysaccharides -starch -glycogen
structural polysaccharides -cellulose forms cell walls in plants -chitin forms exoskeleton of bugs/anthropods
elements in carbohydrates -Carbon -Hydrogen -Oxygen
functional groups -one carbonyl (C=O) -many hydroxyl (OH)
monomer of carbohydrates -monosaccharide
polymer of carbohydrates -polysaccharide
starch -storage polysaccharide in plants
glycogen -storage polysaccharide in animals -stored in liver and muscle cells
protein -molecule made up of polypeptides (polymer of amino acids) -shape determines function
amino acids -carboxyl and amino group -20 different proteins with unique side chains -determines unique chemical and physical aspects -side chains interact to determine shape and function
amino acid side chain groups 1. nonpolar (hydrophobic) 2. polar (hydrophilic) 3. ionic/charged (hydrophilic)
peptide bonds -carboxyl group bonded next to amino group
polypeptides -many amino acids linked by peptide bonds -each has unique amino acid and directionality -each end is unique (N-terminus and C-terminus) -sequence of AAs determines shape (function) -R group interacts and polypeptide twists -forms protein
N-terminus -one end free amino group
C-terminus -one end free carboxyl group
five functions of proteins 1. antibody 2. messenger 3. structural 4. enzyme 5. transport/storage
antibody -a protein function -protects body from disease
messenger -a protein function -transmits signals (hormones)
structural -a protein function -offers structure and support
enzyme -a protein function -carry chemical reactions -creates new molecules
transport/storage -a protein function -binds to and carries small atoms and molecules
four levels of protein structures -primary, secondary, tertiary, quaternary -all levels determine function
primary level -determined by genes -dictates secondary and tertiary levels
secondary level -hydrogen bonds cause it to coil and fold in polypeptide backbone
tertiary level -3D folding caused by side chain interactions -reinforced by hydrophobic and disulfide bridges
disulfide bridges -covalent bonds between sulfur and two cysteine monomers
quaternary level -association of 2+ polypeptides -only in some proteins
pleated sheet -hydrogen bonds with polypeptides side by side
alpha helix -hydrogen bonds every 4th amino acid
elements in protein -Carbon -Hydrogen -Oxygen -Nitrogen -Sulfur
formation order -amino acid to -peptide to -polypeptide to -protein
elements in nucleic acids -Carbon -Hydrogen -Oxygen -Nitrogen -Phosphorus
monomers of nucleic acids -nucleotides
nucleic acids function -store hereditary information -transmit hereditary information -express hereditary information
forms of nucleic acids -Deoxyribonucleic Acid (DNA) -Ribonucleic Acid (RNA)
nucleotides -nucleotide to polynucleotide to nucleic acid -three parts -nitrogenous base -five carbon sugar -phosphate group (each monomer has one phosphate group)
polymer of nucleic acids -polynucleotide
nitrogenous base -pyrimidines and purines
pyrimidines -one ring with six atoms -Cytosine -Thymine (only DNA) -Uracil (only RNA)
purines -two rings -six atoms on one, five on another -Adenine -Guanine
5 carbon sugar -sugar bonded to nitrogenous base -Deoxyribose and Ribose -differ in structure and function
sugar in DNA -deoxyribose
sugar in RNA -ribose
phosphate group -phosphate group added to five carbon sugar -attaches to base -forms nucleotide
polynucleotides -phosphate group links nucleotides with phosphodiester linkage -determines directionality (5' to 3')
sequence of bases -unique to gene -determines Amino Acid sequence -determines protein structure
Deoxyribonucleic Acid (DNA) -two polynucleotides form double helix -strands are antiparallel -held together by hydrogen bonds -Cytosine bonds to Guanine -Adenine bonds to Thymine
Ribonucleic Acid (RNA) -single strand polynucleotide -varies in shape -Adenine bonds to Uracil -Cytosine bonds to Guanine
Created by: 26salisburb
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