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Microbiology-Quiz1
| Question | Answer |
|---|---|
| What kind of bacteria has metachromatic granules in its cytoplasm (polymerized phosphate)? | Diptheria |
| Key difference between cytoplasmic and outer membrane of gram negative bacteria? | cytoplasmic membrane has selective transport proteins while outer membrane has porins that allow molecules to diffuse through. |
| Name the bacteria that does not have a cell wall. | Mycoplasma |
| What acid is unique to the cell wall of gram positive organisms? | Teichoic acid. |
| What kind of antigen does flagella have? | H antigen |
| What kind of antigen does LPS have? | O antigen |
| What is located in the periplasmic space of gram negative bacteria? | betalactimases-can degrade penicillins. |
| Why do gram positives stain purple? | higher peptidoglycan (mix of NAG and muramic acid) content in cell wall. |
| Name two bacteria types that make spores | clostridia and bacillus, both large gram positive rods. |
| What component of the spore coat is the source of resistance for the spore? | dipicolinic acid, proteinaceous outer coat. |
| 4 mechanisms of membrane transport-which one modifies the substrate? | passive, facilitated, active and sugar transports. Only sugar modifies the substrate. |
| 2 differences between bacterial and eukaryotic flagella? | In bacteria the flagella has no longitudinal fibers and no membrane coat. |
| 4 functions of cytoplasmic membrane | 1) oxidative enzymes 2)has enzymes for external cell wall synthesis. 3) pump nutrients from dilute external media 4) secrete toxins. |
| Why won't vancomycin work against gram negative bacteria? | Too large, can't cross the outer cell membrane. |
| Where is lipid A of endotoxin located? | embedded in the lipid bilayer of the outer membrane. |
| What are common encapsulated bacteria? (6) | 1) Haemophilus influenzae 2) Streptococcus pneumoniae 3) Bacteroides 4) Strep A 5) Bacillus anthrax 6) Yersinia |
| What is a glycocalyx and what kind of bacteria produce this? | Glycocalyx is a slime layer (carbohydrate polymers on surface of cell wall). made by gram positive bacteria only. |
| What is happening in the lag phase of bacterial growth? | adaptation to host-metabolic activity with no increase in numbers |
| Why are stationary phase bacteria often more resistant to antimicrobials? | Penicillins won't work if bacteria isn't growing/dividing. |
| Give two exceptions to the rule that pathogenic bacteria like to grow at 37 degrees? | 1) mycobacterium leprae-likes to grow on extremities-slightly lower than body temps. 2) listeria monocytogenes-likes to grow at refrigerator temps. |
| What is the best way to count viable #'s of cells? | Culture and look for Colony Forming Units. Plate Count divided by dilution factor. |
| two things bacteria make to get iron from host. | 1)siderophores 2) hemolysins |
| What kind of phosphorylations happen in glycolysis vs. fermentation? | glycolysis includes substrate level and oxidative phosphorylation as part of the ETC. Fermentation only includes substrate level. |
| Give examples of obligate anerobes, aerotolerant anerobes, microaerophiles, facultative anerobes and obligate aerobes | 1) ob. anaerobes: b. fragilis, clostridium perfringes. 2) aerotolerant anearobes: strep, lactobacillus, some clostridia. 3) microaerophiles: campylobacter. 4) fac. anaerobes: e.coli, salmonella, staph. 5) obligate aerobes: nocardia, pseudomonas, TB |
| Name 2 bacteria that can grow on lactose and 2 that can't. | 2 can: e.coli/klebsiella. (have galactosidase) 2 can't: salmonella and shigella. |
| In glycolysis is glucose oxidized or reduced to become pyruvate? | oxidized (and NAD is reduced to become NADH) |
| What process makes carbs from fats? | glycoxylate shunt (bacteria can do, humans cannot). |
| Where does oxidative phosphorylation happen in the bacteria? | cytoplasmic membrane |
| In fermentation is pyruvate oxidized or reduced? | reduced (and NADH is oxidized to NAD). |
| Name first three of 6 different types of fermentation products. | 1) homolactic fermentation-lactic acid (lactobacillus, streptococus) 2) butyric acid fermentation-clostridia. protects from e.coli. 3) propionic acid fermentation (corynebacteria) Used in swiss cheese making. Also bacteria in acne. |
| Name last 3 of 6 different types of fermentation products | 4)Mixed acid: enterobac. (e.coli, salmonella, shigella). Make acetyl COA, formic acid. Salmonella-H2 gas Shigella none. 5) Butanediol formation-acetoin made. non-fecal bacteria: Klebsiella, Enterobacter. 6) Ethanol fermentation-yeasts,C02 as well. |
| what is the role of superoxide dismutase vs. catalase? | superoxide dismutase breaks down superoxide to hydrogen peroxide and oxygen. Catalase breaks down hydrogen peroxide to water and oxygen gas. (anerobes lack both enzymes). |
| What is the strickland reaction? | special fermentation in clostridia, ferment amino acids. |
| Describe body reaction to LPS | macrophages get activated, secrete TNF-alpha. Lead to increase of plasma proteins in tissue, increased permeability of blood vessels, lymphocyte/phagocyte migration and platelet adhesion. Leads to blood vessel occlusion. Systemic-hypotension and DIC. |
| Does endotoxin get destroyed in autoclaves? | No--heat stable. |
| Name 3 endogenous pyrogens. | IL-1, TNF-alpha, IL-6. Lead to release of prostaglandins, increase metabolic rate, vasoconstriction. Fever. |
| What is the difference between functional and actual hypovolemia? | functional: space due to vasodilation. Actual: space due to blood leaking. |
| what pathway of complement does LPS activate? | alternative. (also lectin) Note also activates the coagulation cascade. |
| What is the limulus test? | tests for LPS-horseshoe crab agglutination test. |
| What is the toxic portion of LPS? the antigenic portion? | toxic=Lipid A (conserved, PAMP) antigenic=O-antigen. (antibodies to O used to serotype strains). |
| What is special about Sabouraud's agar that helps Fungi grow? | high acid environment--fungi are acid tolerant |
| what are the two forms of growth for fungi and how do you describe the growth? | 1) yeast-polarized growth and then isotropic growth. 2) hyphae-always polarized from tip-penetrative. |
| What are the 3 phyla that include pathogenic fungi? | 1) ascomyctes-includes candida, aspergillus 2) basidiomycetes-mushrooms, cryptococcus neoformans. 3) zygomycetes-including mucor. |
| name of sterol in fungi cytoplasmic membrane? | ergosterol (amphotericin B binds to while the enzyme that makes it is the target for azoles) |
| What is the major component of the fungus cell wall? | beta 1,3 glucan inner layer (PAMP) and chitin--crosslinked via glycosidic bonds. GPI anchors transfer carboyhdrates to beta 1, 6 glucans)-cross link with glycoproteins that protect the inner glucan layer. (MANNAN PROTEINS=outer layer) |
| Are fungi motile? | no |
| Which fungus does not use ergosterol in its cytoplasmic membrane? | Pneumocystis |
| the antibody response of a host to fungus is directed at what? | the carbohydrate portion of glycoproteins (mannan, glactomannan, xylose) |
| what is the only pathogenic fungus with a capsule? | cryptococcus neoformans. Capsule is made of polymers of glucuronoxylomannan (GXM). |
| how is the geographic distribution of fungi determined? | delayed type hypersensitivity skin testing |
| What is the difference between exogenous and endogenous fungi? | exogenous=free living, ecological niche is in nature. endogenous=associated with human hosts, don't survive very long outside (candida albicans). |
| name 2 examples of secondary metabolites of fungi. | 1) lovastatin-made by aspergillus terreus. 2) aflatoxins-toxic at low concentrations-concern in grain industry. (also with peanuts). |
| What are two terms for hypha that don't have septa? | 1) aseptate 2) coenocytic-mass of protoplasm from repeated nuclear division, no cell fission. |
| In C. albicans what dimorphic form is found in the host vs the environment? | host=hyphal, environment=yeast. (unique, other dimorphic fungi are opposite). |
| What is auxotrophy? | inability to synthesize essential metabolites. (wild type is prototroph). |
| What experiment showed that mutations are spontaneous and not induced by selective pressure? | Lederberg-replica plating with velvet (selective and non-selective media). Can show colony had resistance before put on the selective media. |
| what test helps with ordering genes in a pathway? | Cross-feeding analysis. If precurser feeds a neighbor it means the precurser is at the end of the pathway. |
| What is a good way to enrich your media for auxotrophs? | penicillin enrichment on minimal media. Get rid of any colonies that can grow, leaves behind those that can't (auxotrophs). |
| What is a good way to get lethal mutations to examine? | Get temperature sensitive mutations-silent at low temps, denature protein at high temps. |
| how do you determine the number of genes in a biosynthetic pathway? | genetic complementation test-chromosome and plamsid. If mutation in same gene then get no product, if in different genes, then they complement each other and can get product. |
| How do you study commensals that can't be cultured? | look at small subunit RNA. (highly conserved) |
| What are the two types of bacteriaphage? | 1) Lytic 2) Lysogenic-eg. Lambda, see site specific recombination to form prophage-viral DNA in bacterial DNA. C1 repressor stops viral DNA genes from being repressed until times of DNA damage/stress and then they are expressed and go into lytic cycle. |
| What is a way bacteria protect themselves from phage? | restriction enzymes |
| What kind of recombination do transposons do? | illegitimate recombination-nonhomologous. Use insertion sequences to insert at random locations. Transposons are often involved in antibiotic resistance. |
| Name 3 mechanisms of gene transfer in bacteria | 1) transformation-bacteria get DNA from environment. 2) Transduction-viral transmission from phage. Can be generalized-random insertion, or specialized if lambda always inserts in same place). 3) Conjugation-bacterial sex (F pilus). |
| 3 examples of bacterial toxins that are transfered by phage? | 1) e.coli shiga like toxin. 2) diptheria toxin. 3) cholera toxin. |
| What is an episome? | extrachromasomal DNA element that is capable of autonomous DNA replication but can also integrate into the chromosome. F is an example. |
| how does the rapid chromogenic antibiotic resistance test work? | if bacteria is resistant will see color as nitrocefin is cleaved when beta lactamase is made (degrades beta lactam antibiotics) |
| How does sulfonilamide work? | Anti-metabolite (anti folic acid metabolism-needed for DNA synthesis), used for urinary tract infection-broad spectrum. Bacteria static. |
| Name 4 antimetabolite antibiotics. | 1) sulfonilamide. 2) trimethoprim-stops Dihydrofolate reductase. 3) bactrim-combo of 1/2. 4) isoniazid-affect mycolic acid-imp. for TB. cidal. |
| Which penicillins are sensitive to acid? | Pencillin G (also sensitve to beta lactamase). Ineffective for gram negative enterics. Pen V. is acid resistant. |
| Which penicillins are broad spectrum? | ampicillin/amoxicillin. Get high serum levels with amoxicillin. |
| Which penicllins are best for enterics/pseudomonas? | tricarcillin, piperacillin. (less good for gram positives) |
| which penicillins are best for staph (narrow spectrum) | oxacillin, dicloxacillin, nafcillin, methicillin. Why are these best? Becuase they are resistant to penicillinase. (unlike penicillin G/V or ampicillin groups). |
| What bacteriocidal antibiotic class is similar to penicillin but with less allergic properties? | Cephalosporins. 3 generations. 3rd generation can handle pseduomonas better at cerebrospinal fluid penetration, others can't. |
| What kind of beta-lactam antibiotic is good for aerobes but not anerobes? | monobactams-azetreonam. Also not good for gram positive. |
| What is augmentin? | beta lactam with a beta lactamase inhibitor (clavulonic acid with amoxicilin). |
| How does vancomycin work? | inhibits gram positive bacteria only- (too big to fit through the porins). R-D-ALA-D-ALA cross link binding-inhibit glycopeptides. |
| Name 2 examples of drugs that affect membrane permeability (and thus bacterial energy source-cidal). | 1) polymyxin B and E-only topical. Gram negatives. 2) Daptomycin (cubicin)-gram positives only. |
| 3 examples of aminoglycosides and how they work. | 1) steptomycin 2) amicacin 3) gentamicin. Work by interacting with small 30S ribosomal subunit--inhibit translation. Cidal-lead to bad proteins. |
| Why do we see so much drug resistance for aminoglycosides? | Very specific binding to the 30S ribosome. (gentamicin has many binding sites and works much better). |
| How do tetracyclines work? | tetracycline and doxycycine block tRNA and are bacteriastatic. Diable ability to synthesize more proteins. Great for intracellular parasites. Chlamydia, rickettsia. Bad for pregnant and kids teeth. |
| How do macrolides work? 2 examples. | 1) azithromycin 2) erythromycin. Both block chain elongation-50S subunit. |
| Which antibiotic is particularly good for anerobes? | Clindamycin |
| What is a limitation of the Kirby-Bauer Disc Diffusion? | Can't be used for determination of Minimal bacteriacidal concentration. (good for multiple testing of antibiotics). |
| What are carbapanems (imipenem)? | antibiotic with beat-lactam ring, broad antimicrobial spectrum, restant to most lactamases, susceptible to renal dipeptidase so use with cilastatin. (Primaxin). |
| Name 2 B-lactamase inhibitors | 1) Clavulonic acid 2) Sulbactam |
| Name 3 glycopeptides and their coverage | 1) vancomycin-Gram positive 2) cycloserine-TB drug 3) Bacitracin-Gram positive Good for topical therapy only. Too toxic for systemic. |
| What 2 conditions inhibit streptomycin? | 1) acidic 2) anaerobic *note that aminoglycosides like streptomycin/genotmycin should only be used in patients with immune compromise as they can damage 8th cranial nerve/renal function. |
| Name 5 antibiotics that inhibit 50S ribosomal function. (all static). | 1) erythromycin-static-chain elongation 2) azithromycin-static-chain elongation 3) Chloramphenicol-static-chain elongation-can get anemia. Good for bacteroides. 4) Clindamycin-good for anaerobes. 5) Streptogramins. |
| How do oxazolidinones (linezolid) work? | inhibit translation-block tRNA translocation-interact with 16S and 23S rRNA. Great for gram positives. |
| How does mupirocin work? | bind to tRNA synthetase and results in no charged Ile-tRNAs. Static at low concentrations, good for MRSA. |
| What 3 drugs are good for inhibiting DNA replication? (one is particularly good for anaerobes) | 1 and 2 are both quinolones-ciprofloxacin and moxifloxacin. Broad range. Inhibit DNA gyrase. Bad for pregnant and children-hurt growing bone. 3) metronidazole-need anaerobic conditions. Binds to DNA and fragments it. 3) |
| what antibiotic inhibits RNA synthesis? | Rifampin-broad spectrum |
| Example of antibiotic antagonism? | agent needing growth (penicillin) and bacteria static drug (tetracyline) |
| Example of antibiotic syndergism? | agent damging cell wall (polymxin or penicillin) and agent that is taken up poorly (aminoglycoside). |
| 5 important anti-fungal drugs: | 1) amphotericin B-bind to sterol 2) Nystatin-bind to sterol, can't be used systemically--too toxic. Static. 3) Fluconazole/ketoconazole-inhibit membrane synthesis. 4) Caspofungin-inhibit glucan synth. cidal. 5) Flucytosine-antimetabolite. replace urac |
| How is fungal resistance conferred? | changes within the fungal genome itself. No resistance mechanisms have been discovered so far. (do see efflux pumps like bacteria have). |