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Chapter 16.2
DNA Replication with Leading and Lagging Strand
| Question | Answer |
|---|---|
| semiconservative model | type of DNA replication in which the double helix replicates, each daughter molecule will have an parental strand and new strand |
| conservative model | the two parent strands rejoin with new daughter molecule |
| dispersive model | each stand is a mix of old and new |
| Meselson and Stahl | -Proved semiconservative model, confirming Watson and Crick's hypothesis -Cultured bacteria in a medium containing heavy nitrogen (15N) and then a medium containing light nitrogen (14N) |
| origin of replication | Site where the replication of a DNA molecule begins -replication occurs in both directions from this point |
| replication bubble | an unwound and open region of a DNA helix where DNA replication occurs |
| bacterial fork | -the parental strand separates from one origin, forming a bubble with two forks -continue replication in both directions until forks meet on other side -resulting in two new daughter cells |
| antiparallel | the two strands of DNA run in opposite 5' - 3' directions |
| replication fork | y-shaped region on replication DNA molecule where the parental strands are being unwound and new strands are synthesized |
| helicase | enzyme that untwists the double helix of DNA at replication forks, separating 2 strands and making them available as template strands |
| single-stranded binding proteins | binds to parental DNA strands, stabilizing them and holding them apart while they serve as templates for the new strands |
| topoisomerase | corrects "overwinding" ahead of replication forks by breaking, swiveling, and rejoining DNA strands |
| primase | enzyme joins RNA nucleotides to make primer during DNA replication using parental DNA strand as template |
| primer | A short polynucleotide with free 3' end, bound by complementary base pairing to the template strand and elongated with DNA nucleotides |
| dna polymerase III | catalyzes the elongation of new DNA at fork -builds in a 5' - 3' direction -cannot initiate synthesis of polynucleotide, only add nucleotides to an existing 3' end -requires a primer and DNA template strand |
| dna polymerase I | Removes RNA nucleotides of primer from 5' end and replaces them with DNA nucleotides added to 3' end of next fragment |
| dna polymerase II | enzyme that proofreads the daughter strand of replicated DNA and corrects any base pairing errors |
| leading strand | along a template strand of DNA, DNA polymerase III synthesizes this continuously moving towards fork |
| lagging strand | to elongate other new strand, DNA polymerase III must work in the direction away from fork -synthesized in series of Okazaki fragments |
| okazaki fragments | short DNA fragments synthesized away from the replication fork on the template strand -many joined together to make up a lagging strand of new DNA -built-in 5' to 3' direction |
| DNA ligase | -on lagging strands, joins Okazaki fragments together -on leading stranding, joins 3' end of DNA that replaces primer to rest of strand |
| dna replication of matrix | -formed by proteins that participate in DNA replication -stationary during the process |
| Steps 1-3 of lagging strand synthesis | 1. Primase joins RNA into first primer for lagging 2. DNA pol III adds DNA nucleotides to 3' end of primer, forming Okazaki fragment 1 3. After reaching the next RNA primer to the right, DNA pol III detaches |
| Steps 4-6 of lagging strand synthesis | 4. Fragment 2 is primed, DNA pol III adds DNA, detaching when it reaches primer 1 5. DNA pol I replaces RNA with DNA to 3' end of fragment 1 6. DNA ligase forms bond between newest DNA and DNA fragment 1 |
| Meselson and Stahl cont. | -after extracting the DNA, demonstrated that the replicated DNA consisted of one heavy strand and one light strand |