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BIO 120 Exam 3
| Term | Definition |
|---|---|
| Cell Division | reproduction of cells that is important for growth and development, reproduction, and tissue removal in multicellular organisms |
| Most cell division results in... | genetically identical daughter cells |
| What are the two ways that cell division and reproduction can occur? | mitosis and meiosis |
| Mitosis | occurs in somatic cells, two sets of chromosomes, start with 1 cell and end up with 2 identical daughter cells |
| Meiosis | occurs in germ cells; consists of two rounds of cell division but only one round of DNA replication. It results in cells with half the number of chromosome sets as the original cell; reduces the number of chromosome sets from diploid to haploid |
| How many sets of chromosomes do germ cells have? | 2 |
| How many sets of chromosomes do gametes have? | 1 |
| Where is DNA housed? | in the nucleus |
| Genome | all of your DNA; every cell in your body besides gametes have this |
| Chromosome | DNA wrapped tightly around protein balls called histones |
| Allele | variations of a gene (as in Aa, 'A' is an allele and 'a' is an allele) |
| Locus | location on a chromosome |
| Gene | a segment of DNA along a chromosome expressed into a protein that is inherited |
| Homologous Chrosomes | pair of chromosomes that are not connected; similar in length, shape, and carry the same genes controlling the same inherited characteristics |
| Breakdown of 23 chromosome pairs... | Sex chromosomes have one pair, autosomes have the other 22 pairs |
| Preparation for cell division | DNA is replicated and chromosomes condense |
| During cell division, sister chromatids of each duplicated chromosome... | separate and move into 2 new nuclei, once separate, the chromatids are called chromosomes |
| Phases of the Cell Cycle | Interphase and mitotic phase |
| What phase takes up the majority of the time during the cell cycle? | interphase |
| Parts of interphase | G1- growth, S- copy DNA- replication (homologous chromosomes become sister chromosomes), and G2- growth, get ready for nuclear division |
| What is the G0 phase? | where cells that don't divide (does not receive a signal to divide) go during the cell cycle such as nerve cells |
| What enabled Watson and Crick to deduce that DNA was helical? | X-ray crystallographic images that helped determine the width of the helix, the spacing of the nitrogenous bases, and the number of strands |
| Double Helix | two complementary DNA strands that bind |
| Mitotic Phase | Consists of mitosis- distribution of chromosomes into two daughter nuclei, and cytokinesis- division of cytoplasm, producing two daughter cells which can both start a new cell cycle |
| Short segments of newly synthesized DNA are joined into a continuous strand by... | ligase |
| The first step in the replication of DNA is catalyzed by... | helicase |
| The action of helicase creates... | replication forks and replication bubbles |
| Why is the new DNA strand complementary to the 3' to 5' strands assembled in short segments? | DNA polymerase can assemble DNA only in the 5' to 3' direction |
| The synthesis of a new strand begins with the synthesis of a... | RNA primer complementary to a preexisting DNA strand |
| What is responsible for catalyzing the formation of an RNA primer? | primase |
| An old DNA strand is used as a ___ for the assembly of a new DNA strand | template |
| DNA replication is semiconservative which means... | each new double helix consists of one old and new strand |
| Thymine always pairs with | adenine |
| Cytosine always pairs with | guanine |
| DNA strands are antiparallel which means... | A 5' to 3' DNA strand is paired with the 3' to 5' DNA strand |
| Leading strand | synthesis occurs continuously, only one prime needed, daughter strand elongates towards the replication fork |
| Lagging strand | synthesis occurs in segments/discontinuously, multiple primers needed, daughter strand elongates away from the replication fork |
| DNA consists of... | a nitrogenous base, sugar (pentose), and phosphate |
| Pyrimidines | cytosine and thymine/uracil |
| Purines | adenine and guanine |
| In any species the numbers of A and T bases and the numbers of C and G bases are... | always equal |
| How are the nucleotides/bases in DNA connected? | hydrogen bonds |
| What determines if the molecule is DNA or RNA? | the sugar molecules |
| Chromatin | a complex of DNA and protein, found in the nucleus of eukaryotic cells |
| DNA replication | when DNA makes a copy of itself |
| Origin of Replication | site where the replication of a DNA molecule begins, consisting of a specific sequence of nucleotides |
| Replication fork | y-shaped regions where new DNA strands are elongating and where replication occurs |
| DNA polymerases | catalyze the elongation of new DNA at a replication fork by adding new nucleotides |
| Helicase | untwists the double helix at the replication fork; breaks the hydrogen bonds |
| Single-strand binding proteins (SSB) | binds to and stabilizes single-stranded DNA; holds it open so new nucleotides can be added by polymerases |
| Topoisomerase | corrects "overwinding" or stress ahead of replication forks by breaking, swiveling, and rejoining DNA strands |
| Primase | adds RNA nucleotides (RNA primer) using the parental DNA as a template |
| DNA polymerase requires | a primer and a DNA template strand |
| DNA polymerase can only add nucleotides to which end? | the 3' end |
| In which direction is DNA replicated? | 5' to 3' |
| How is newly made DNA proofread? | DNA polymerases relace any incorrect nucleotides through nucleotide excision repair |
| Nucleotide Excision Repair | A nuclease enzyme cuts out the damaged section of DNA, DNA polymerase fills in the missing nucleotides, and ligase connects the new strand |
| What happens to DNA every time it separates? | It gets shorter due to it ending on a RNA primer |
| The shortening of telomeres is connected to what? | Aging |
| Telomeres | repetitive nucleotide sequences on the end of eukaryotic chromosomal DNA molecules; postpone the erosion of genes near the ends of DNA molecules |
| Telomerase | an enzyme that catalyzes the lengthening of telomeres in germ cells |
| 5 Phases of Mitosis | prophase, prometaphase, metaphase, anaphase, and telophase |
| Prophase | nucleoli disappears, chromosomes appear as 2 identical sister chromatids joined at their centromeres, centrosomes begin to form the mitotic spindle and move away from each other |
| Prometaphase | chromosomes are condensing, microtubules connect to the kinetochores |
| Metaphase | Centrosomes are on opposite polls of the cells and chromosomes line up in the middle |
| Anaphase | the sister chromatids are separated and become daughter chromosomes |
| Telophase | chromosomes become less condensed, remaining spindle microtubules are depolymerized (broke down), nucleoli reappear |
| Cytokinesis | splits the cytoplasm once mitosis is done so that there are two daughter cells (splits at cleavage furrow in animal cells) |
| What regulates the eukaryotic cell cycle? | a molecular control system |
| Cell Cycle Control System | controls the cell cycle (similar to a clock) and is regulated by different checkpoints |
| The frequency of cell division varies with ... | the type of cell |
| MPF (mitosis promoting factor) | regulates a cell's passage past the G2 checkpoint into the M phase; mitosis doesn't start until there is enough MDF and it is later degraded at the end of the M phase |
| The cell cycle clock consists of... | cyclins and cyclin-dependent kinases (CDK) |
| G1 Checkpoint | checks for cell size, nutrients, growth factors, and DNA damage |
| G2 Checkpoint | checks for cell size and proper DNA replication |
| Spindle Assembly Checkpoint | checks for chromosome attachment to spindles |
| Living organisms are distinguished by their ability to... | reproduce their own kind |
| Genetics | the scientific study of heredity and variation |
| Variation | demonstrated by the differences in appearance that offspring show from parents and siblings |
| Heredity | the transmission of traits from one generation to the next |
| Offspring acquire genes from their parents by inheriting... | chromosomes |
| How are genes passed to the next generation? | reproductive cells (germ cells) which produce gametes (sperm and egg) |
| Life Cycle | how we go from gametes to living, reproducing organisms |
| Two types of reproduction | asexual and sexual |
| Asexual Reproduction | reproduction by one parent through either binary fission or budding which makes an exact copy of the parent |
| Sexual Reproduction | produces gametes that increase genetic variation |
| Fertilization | the union of sperm and egg |
| Zygote | a fertilized egg; diploid cell produced by the union of haploid gametes that will grow via mitosis |
| Diploid Cell | (2n) has two sets of chromosomes |
| Human diploid number | 46 (2n=46) |
| Haploid Cell | (n) has one set of chromosomes |
| Human haploid number | 23 (n=23) |
| Which cells can divide by mitosis? | haploid or diploid cells |
| Which cells can undergo meiosis? | only diploid cells |
| DNA replication in mitosis and meiosis occurs when? | in interphase |
| Number of divisions in mitosis | 1 |
| Number of divisions in meiosis | 2 |
| Number of daughter cells and genetic composition in mitosis | Two, each diploid (2n) and genetically identical to the parent cell |
| Number of daughter cells and genetic composition in meiosis | Four, each haploid (n), containing half as many chromosomes as the parent cell; genetically different from the parent cell and from each other |
| Meiosis I | homologous chromosomes pair up and separate, resulting in 2 haploid daughter cells with replicated chromosomes |
| Meiosis II | sister chromatids separate |
| 4 phases of meiosis I and II | prophase, metaphase, anaphase, telophase/cytokinesis |
| What stage of meiosis is most similar to mitosis? | meiosis II |
| What phase of meiosis typically takes up 90% of the time? | prophase I |
| Prophase I | each pair of chromosomes form a tetrad (four chromatids together), each tetrad usually has one or more regions where crossing over occurs |
| Crossing over | when homologous chromosomes (non-sister chromatids) exchange segments of DNA in prophase I (increases variation) |
| What does crossing over create? | recombinant chromosomes (combines DNA from both parents into one chromosome) |
| Metaphase I | microtubules from one pole are attached to the kinetochore of one chromosome of each tetrad and lines them up in the middle of the cell |
| Anaphase I | one chromosome from each tetrad moves towards each pole, homologous chromosomes separate, sister chromatids stay together |
| Telophase I and Cytokinesis | cleavage furrow forms making two haploid daughter cells |
| Difference between plants and animals in cytokinesis | animals- a cleavage furrow forms; plants- a cell plate forms |
| When does the cell become haploid in meiosis? | meiosis I |
| Prophase II | 2 cells coming from telophase/cytokinesis, mitotic spindle forms, nuclear envelope fragments, and chromosomes condense |
| Metaphase II | microtubules attach to the kinetochores of sister chromatids and line them up in the middle of the cell |
| Anaphase II | sister chromatids separate and move to opposite poles of the cell |
| Telophase II/ Cytokinesis | cytokinesis separates the cytoplasm again forming four cells (two cells split) |
| Three mechanisms that contribute to genetic variation: | crossing-over, independent assortment of chromosomes, random fertilization |
| The information content of DNA is in the form of... | specific sequences of nucleotides |
| The DNA inherited by an organism leads to specific traits by... | dictating the synthesis of proteins |
| What is the link between genotype and phenotype? | proteins |
| Gene expression | the process by which DNA directs protein synthesis |
| Genotype | genetic makeup |
| Phenotype | physical appearance or function |
| Does DNA leave the nucleus? | no |
| Two stages to make a protein using the information in DNA: | transcription and translation |
| Transcription | the synthesis of RNA using DNA as a template |
| Translation | the synthesis of a polypeptide (protein) using mRNA as a template |
| 3 types of RNA | mRNA, rRNA, tRNA |
| Messenger RNA (mRNA) | transcribes the directions to make a protein through protein synthesis that are in DNA |
| In what direction does mRNA transcribe DNA? | 5' to 3' |
| Ribosomal RNA (rRNA) | found in ribosomes |
| What makes up a ribosome? | rRNA and a protein |
| Ribosome | site of protein synthesis by the process of translation |
| Transfer RNA (tRNA) | picks up a specific amino acid and carries it to the ribosome, where tRNA recognizes the appropriate codon in the mRNA |
| tRNA structure | held together by hydrogen bonds, has anti-codon loops containing a codon which pairs with the mRNA codon during translation (runs 3' to 5'), also carries a specific amino acid on the other end |
| Where are codons found? | on mRNA |
| First stage of gene expression | transcription |
| Molecular components of transcription | promoter, transcription factors, and RNA polymerase |
| Transcription factor | a regulatory protein that binds to DNA and affects transcription of specific genes |
| Three stages of transcription and translation | initiation, elongation, and termination |
| Initiation (transcription) | complex forms, RNA polymerase binds to DNA |
| Elongation (transcription) | RNA polymerase adds RNA nucleotides to make a new mRNA molecule. Sequence is complementary to the template strand |
| Termination (transcription) | RNA polymerase is released form the template strand. Completed RNA transcript |
| Base change in RNA | uracil instead of thymine (a now pairs with u) |
| Modifications of a pre-mRNA molecule | 5' end has a 5' cap which carries phosphates to provide energy and the 3' end has a poly-A tail which is a sequence of nucleotides that prevents erosion |
| Functions of the modifications of a pre-mRNA molecule | facilitate the export of mRNA, protect mRNA from hydrolytic enzymes, and help ribosomes attach to the 5' end |
| RNA splicing consists of... | snurps (snRNP's) and spliceosomes |
| Snurps (snRNP's) | flag areas that are non-coding to be spliced |
| Spliceosome | cuts out non-coding areas flagged by snurps on the mRNA |
| RNA splicing removes____ and joins _____ | introns, exons |
| Introns | noncoding regions that are spliced out of mRNA |
| Exons | coding regions that leave the nucleus in the proofread mRNA; portions of sequence that will be expressed |
| Genetic information flows from mRNA to protein through which process? | translation |
| Molecular components of translation | mRNA, tRNA, and ribosomes |
| Why are molecules of tRNA not identical? | each tRNA carries a specific amino acid on one end called a free amino acid |
| Three binding sites for tRNA on a ribosome | P site, A site, E site |
| How are the sites on a ribosome read? | APE |
| P site | growing polypeptide site |
| A site | where the amino acid comes in; tRNA transfers in a free amino acid based on a codon in mRNA |
| E site | emptied tRNA exits |
| Initiation (translation) | brings together mRNA, a tRNA with the first amino acid, and the two ribosomal subunits |
| Termination (translation) | occurs when a stop codon in mRNA reaches the A site of the ribosome |
| According to Beadle and Tatum's hypothesis, how many genes are necessary for a simple metabolic pathway? | 2 |
| What enzyme catalyzes the attachment of an amino acid to tRNA? | aminoacyl-tRNA synthetase |
| The tRNA anticodon, GAC, is complementary to the mRNA codon with the sequence _____. | CUG |
| The initiator tRNA attaches at the ribosome's _____ site. | P |
| What name is given to the process in which a strand of DNA is used as a template for the manufacture of a strand of pre-mRNA? | transcription |
| What name is given to the process in which the information encoded in a strand of mRNA is used to construct a protein? | translation |
| What name is given to the process in which pre-mRNA is edited into mRNA? | RNA processing |
| Polypeptides are assembled from... | amino acids |
| RNA processing converts the RNA transcript into... | mRNA |
| What is the process called that converts the genetic information stored in DNA to an RNA copy? | transcription |
| DNA does not store the information to synthesize which of the following? -Organelles -mRNA -Proteins -DNA | Organelles |
| Promoter | a site in DNA where RNA polymerase must bind to initiate transcription; regulatory region of a protein-coding gene |
| What determines which base is to be added to an RNA strand during transcription? | Base pairing between the DNA template strand and the RNA nucleotides |
| Which of the following terms best describes the relationship between the newly synthesized RNA molecule and the DNA template strand? | Complementary |
| What happens to RNA polymerase II after it has completed transcription of a gene? | It is free to bind to another promoter and begin transcription |
| The genetic code is essentially the same for all organisms. From this, one can logically assume... | a gene from an organism can theoretically be expressed by any other organism |
| Building blocks of proteins | amino acids |
| What is the polymer called that is made up of monomers that is specific to a protein? | polypeptide |
| What is the bond called between the monomers of the growing polymer? | peptide bond |
| Where is the site of protein reproduction in a cell? | ribosome |
| How does the cell know what protein to produce? Where is the information stored? | tRNA brings in a free amino acid which matches up with the codon on mRNA |
| How is nucleic acid and a protein connected? | The sequence of the codons in nucleic acids determines the sequence of amino acids in a protein |
| What RNA has the codon? | mRNA |
| What is an anti-codon and what RNA has it? | An anti-codon matches up with the codon and decodes mRNA during protein synthesis. tRNA has the anti-codon |
| Does an anti-codon or a codon determine what amino acid it is? | anti-codon |
| What is the directionality of a DNA template strand? | 3' to 5' |
| Wobble base | flexible pairing at the third base of a codon that allows some tRNAs to bind to more than one codon (ex. AUU, AUC, and AUA, all code for Ilc) |
| Mutations | changes in the genetic material of a cell |
| Point mutations | a type of missense mutation where there is a change in just one base pair of a gene |
| Silent mutations | has no effect on the amino acid produced by a codon because of redundancy in the genetic code |
| Missense mutations | can affect one or more bases causing coding for an incorrect amino acid |
| Nonsense mutations | changes an amino acid codon into a stop codon, nearly always leading to a nonfunctional protein |
| What number and types of chromosomes are found in a human somatic cell? | 44 autosomes and 2 sex chromosomes |
| How do homologous chromosomes and sister chromatids differ from each other? | Homologous chromosomes contain the same gene loci but may have different alleles of a particular gene. Sister chromatids are identical copies of each other produced during DNA replication. |
| When does synapsis occur? | prophase I |
| During _____ chromosomes align single file along the equator of a haploid cell. | metaphase II |
| During _____ both the contents of the nucleus and the cytoplasm are divided. | the mitotic phase |
| During _____ the cell grows and replicates both its organelles and its chromosomes. | interphase |
| Nucleoli are present during... | interphase |
| Which of the following results when homologous chromosomes cross over in meiosis? | Corresponding segments of non-sister chromatids are exchanged |