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BIO 1-4

Exam 1 review

TermDefinition
The 3 domains: Archaea, bacteria, and eukarya
The levels of classification: Domain, Kingdom, Phylum, Class, Order, Family, Genus, Species
Characteristics of living organisms: Complexity, Movement, Response to stimulation, Cellular Organization, Energy Utilization, Homeostasis, Growth, development, & reproduction, and heredity
Fundamental Properties of Life: Cellular organization, energy utilization (photosynthesis), homeostasis, growth, development, & reproduction, and heredity
Homeostasis - The maintenance of a relatively stable internal physiological environment in an organism; usually involves some form of feedback self-regulation.
Heredity - DNA replicaiton and duplication onto offspring
Photosynthesis - the process by which green plants and some other organisms use sunlight to synthesize foods from carbon dioxide and water
Consumers include: herbivores and carnivores
Heterotrophs - organisms that can’t derive energy from photosynthesis so it must feed on other plants and animals
Atom - The smallest fundamental unit of a chemical compound that can take part in a chemical reaction
Organelle - the specialized part of a cell; literally, a small cytoplasmic organ
Cell - the basic unit of life
Cellular Levels: Atoms, molecules, organelles
Organismal Levels: Tissues, organs, organ systems, organisms
Ecosystem Levels: (each level has emergent properties) population (same place), specis (specific kind), community (different species in one place), ecosystem (biological community and physical habitat), biosphere (earth)
Emergent Properties - Novel properties arising from the way in which components interact. Emergent properties often can’t be deduced solely from knowledge of the individual components.
Deductive Reasoning - general principles to make specific predictions
Inductive reasoning - specific observations to develop general conclusions
Self correcting - a systematic approach to gain an understanding of the natural world
Scientific Method - An orderly sequence used when testing a hypotheses
Scientific Method: Observation, Hypothesis formation, prediction, experimentation, and conclusion
Variable - A factor that influences a process, an outcome, or an observation. In experiments, scientists attempt to isolate variables to test hypotheses.
Experiment - tests hypotheses
Test Experiment - one variable is altered
Control Experiment - variable is left unaltered
Models - Organize thought, show relationships between parts, and suggest experiments
Scientific theory - a statement supported by evidence and scientific reasoning, is the most certain explanation
Evolution - the change in the characteristics of a species over several generations and relies on the process of natural selection
Alfred Russel Wallace - a young man who proposed a theory similar to Darwins, thus causing Darwin to publish his book
Darwin and Evolution - Darwin originally proposed the theory of evolution, which caused the theory to gain acceptance
Jean Baptiste de Lamarck – inheritance of acquired characteristics (1801)
Natural selection - The differential reproduction of genotypes; caused by factors in the environment; leads to evolutionary change
Selection - the process by which some organisms leave more offspring than competing ones, and their genetic traits tend to appear in greater proportions among members of succeeding generations than the traits of those individuals that leave fewer offspring
Homologous - same evolutionary origin, different in structure and function
Analogous - different origin, same purpose (butterfly and bird wings)
Unifying Themes in Biology: 1. Life is subject to chemical and physical laws, 2. Structure determines function, 3. Living systems transform energy and matter, 4. Living systems depend on information transactions, and 5. Evolution explains the unity and diversity of life
Inductive Reasoning - specific observations to develop general conclusions
self correcting - a systematic approach to gain an understanding of the natural world
Scientific method - an orderly sequence used when testing a hypothesis
Subatomic particles: Protons, neutrons, and electrons
Protons - positively charged particles found in the nucleus
Neutrons - neutral particles found in the nucleus
Electrons - negatively charged particles found in orbitals surrounding the nucleus
Niels Bohr - created the atomic diagram
Atomic number - number of protons in an element
If the amount of protons equals the amount of electrons, then the atoms are ______________. electrically neutral
Element - a substance that can’t be broken down by ordinary means
Atomic mass - sum of protons plus neutrons in an element
Orbital - a region around the nucleus of an atom with a high probability of containing an electron. The positions of electrons can only be described by these probability distributions
Ions - charged particles
Cation - a positively charged ion
Anion - a negatively charged ion
Isotopes - different forms of the same element with the same number of protons but different numbers of neutrons
Radioactive isotope - an isotope that is unstable and undergoes radioactive decay, releasing energy
Potential energy - the farther an electron is from the nucleus, the more potential energy it has
Redox Reaction - when one atom or molecule is oxidized while another is reduced in the same reaction
Oxidation - loss of an electron
Reduction - gain of an electron
LEO the lion goes GER: Loss of an electron → oxidation, Gain of an electron → reduction
Valence electrons - of electrons on the outermost energy level of an atom
Octet rule - a rule that describes a total of eight electrons are needed to complete an atoms outer electron shell
These 4 main elements make up 96.3% of human body weight: Carbon, hydrogen, oxygen, nitrogen
Molecules - common atoms in stable association
Compounds - molecules containing more than one type of element
Chemical bonds - the energy or force holding atoms together
Ionic Bond - Chemical bond former by electrostatic interaction between ions with opposite charge
Covalent bond - a chemical bond arising from two atoms sharing one or more electrons
Electronegativity - a property of atomic nuclei that refers to the affinity of the nuclei for valence electrons; a nucleus that is more electronegative has a greater pull on electrons than one that is less electronegative
Nonpolar covalent bonds - equal sharing of electrons
Polar covalent bonds - unequal sharing of electrons
Hydrogen bond - a weak association formed with hydrogen in polar covalent bonds. The partially positive hydrogen is attracted to partially negative atoms in polar covalent bonds
Van der Waals Forces - a weak chemical interaction between atoms and molecules. This affects the structure of important biological molecules.
Reactants - original molecules
Products - molecules resulting from reaction
Polarity - refers to unequal charge distribution in a molecule such as water, which has a positive region and a negative region although it is neutral overall.
Cohesion - attraction between water molecules
Adhesion - water molecules stick to other polar molecules
Acid - any substance that dissociates in water to increase the hydrogen ion concentration and thus lower the ph
Base - any substance that dissociates in water to absorb and therefore decrease the hydrogen ion concentration and thus raise the ph.
Buffer - A substance that resists changes in ph. it releases hydrogen ions when a base is added and absorbs H+ when an acid is added
Functional Group - a molecular group attached to a hydrocarbon that confers chemical properties or reactivities
Isomer - one of a group of molecules identical in atomic composition but differing in structural arrangement; for example, glucose and fructose
Structural isomers - differ in the actual carbon skeleton
Stereoisomers - differ in the spatial arrangement of the groups attached to a carbon skeleton
Enantiomers - mirror image molecules
Glucose - C6H12O6
Macromolecules: Carbohydrates, Lipids, Proteins, Nucleic acids
Polymer - A molecule composed of many similar or identical molecular subunits; starch is a polymer of glucose.
Monomer - The smallest chemical subunit of a polymer. The monosaccharide α-glucose is the monomer found in plant starch, a polysaccharide.
Dehydration reaction - formation of polymer, removal of water
Hydrolysis - breakdown of polymer, addition of water
Monosaccharides - a simple sugar that can’t be decomposed into smaller sugar molecules
Disaccharides - a carbohydrate formed of two simple sugar molecules bonded covalently
Polysaccharide - a carbohydrate composed of many monosaccharide sugar subunits linked together in a long chain; examples are glycogen, starch, and cellulose.
Protein functions include: Enzyme catalysis, defense, transport, support, motion, regulation, storage
Amino Acid - the subunit structure from which proteins are produced, consisting of a central carbon atom with a carboxyl group, an amino group, a hydrogen, and a side group; only the side group differs from one amino acid to another
Polypeptide - a molecule consisting of many joined amino acids; not usually as complex as a protein
Types of R groups: Nonpolar, Polar uncharged, Charged, Aromatic, Unique
Peptide Bond - the type of bond that links amino acids together in proteins through a dehydration reaction
The form of a protein determines its functions
Levels of proteins structure: Primary, Secondary, Tertiary, Quaternary
Tertiary structure is stabilized by: Hydrophobic regions, Ionic bonds btw R groups, Disulfide bonds (cysteine)
Chaperone Proteins - a class of enzymes that help proteins fold into the correct configuration and can refold proteins that have been misfolded or denatured
Heat Shock Proteins a protein that acts as a molecular chaperone
Denaturation - the loss of the native configuration of a protein or nucleic acid as a result of excessive heat, extremes of pH, chemical modification, or changes in solvent ionic strength or polarity that disrupt hydrophobic interactions; usually accompanied by loss of
Renaturation when a protein may spontaneously refold into its natural shape, driven by the interactions between its nonpolar aminoacids and water
Dissociation - in proteins, the reversible separation of protein subunits from a quaternary structure without alterinf their tertiary structure
Nucleic Acid - A nucleotide polymer; chief types aew DNA, which is double-stranded, and RNA, which is typically single stranded
nucleotide - a single unit of nucleic acid, composed of a phosphate, a five-carbon sugar, and a purine or a pyrimidine
phosphodiester bonds - bonds that connect nucleotides
Purines - adenine and guanine
Pyrimidines - thymine, cytosine, uracil
complimentary strands - apples on trees, cars in garages (AT, CG)
DNA versus RNA DNA is double stranded, deoxyribose, and has thymine. RNA is single stranded, ribonucleic, and has uracil.
Many Roles of RNA RNA carries info in the form of messenger RNA, is part of the ribosome in the form of ribosomal RNA, and carries amino acids in the form of transfer RNA
ATP - adenosine triphosphate
Lipids - a nonpolar hydrophobic organic molecule that is invaluable in water but dissolves readily in nonpolar organic solvents; includes fats, oils, waxes, steroids, phospholipids, and carotenoids.
Triglycerides - an individual fat molecule, composed of a glycerol and three fatty acids
Types of fatty acids: Saturated, Unsaturated, Trans fats - synthetic
Other lipids : Steroids
The two types of isomers: structural isomers and stereoisomers
Carbs ex: starch, glycogen (animal starch), cellulose, chitin
Proteins ex: functional and structural
Nucleic acids ex: DNA and RNA
Lipids: fats, phospholipids, prostagladins, steroids, terpenes
Robert Hooke - Was the first to observe cells in 1665.
Schleiden and Schwann - Cell Theory: 1. All organisms are composed of cells, 2. Cells are the smallest living things, and 3. Cells arise only from pre-existing cells
Rate of diffusion is affected by: 1. Surface area available, 2. Temperature, 3. Concentration gradient, and 4. Distance
Cell Size is Limited Surface Area to Volume Ratio
Organelles - specialized part of a cell; a small cytoplasmic organ
Resolution - minimum distance two points apart and distinguished as two separate points
Types of Microscopes: Light microscopes and Electron microscopes
Types of electron microscopes: Transmission electron and Scanning electron microscopes
All cells exhibit basic structural similarities: Centrally located genetic material, Cytoplasm, Ribosomes, Plasma membrane
Prokaryotic Cells: consist of a nucleoid, cell wall, ribosomes, flagella, pili, capsule
nucleoid - the area of a prokaryotic cell, usually near the center, that contains the genome in the form of DNA compacted with protein
Cell wall - the rigid, most outermost layer of the cells of plants, some protists, and most bacteria; the cell wall surrounds the plasma membrane
Ribosomes - the molecular machine that carries out protein synthesis; the most complicated aggregation of proteins in a cell, also containing 3 different rRNA molecules
Bacterial Cell Wall - 1. composed of peptidoglycan, 2. protect, maintain shape, and prevent excessive uptake or loss of water, and 3. Susceptibility to antibiotics
Flagella - long, threadlike structures protruding from the surface of a cell and used in locomotion
Eukaryotic cells: have a membrane-bound nucleus, cytoskeleton (support and cellular structure), ribosomes, endomembrane system, ER, golgi apparatus, lysosomes, lysobodies, proteosomes, plant vacuoles, lysosomes, digestive vesicles, peroxisomes, mitochondria, etc.
Eukaryotic Cell Features: Plasma membrane, Cytoplasm, Organelles, Cytoskeleton
Nucleus includes - DNA, nucleolus, nuclear envelope, and nuclear pores
DNA - The genetic material of all organisms; composed of two complementary chains of nucleotides wound in a double helix
Ribosomes - The molecular machine that carries out protein synthesis; contains mRNA, tRNA, rRNA , and proteins
Endomembrane System - A system of connected membranous compartments found in eukaryotic cells
Endoplasmic reticulum - Internal membrane system that forms a netlike array of channels and interconnections within the cytoplasm of eukaryotic cells.
The two compartments of the endoplasmic reticulum: Rough ER and smooth ER
Golgi apparatus - A collection of flattened stacks of membranes in the cytoplasm of eukaryotic cells; functions in collection, packaging, and distribution of molecules synthesized in the cell
Lysosomes - A membrane-bounded vesicle containing digestive enzymes that is produced by the golgi apparatus in eukaryotic cells. They destroy cells or foreign matter from phagocytosis
Peroxisomes - a microbody that plays an important role in the breakdown of highly oxidative hydrogen peroxide by catalase.
Proteosomes - a large, cylandrical cellular organelle that degrades proteins marked with ubiquitin
ubiquitin - a small protein that acts like a tag or signal
Vacuoles (found in plant cells) - a membrane-bounded sac in the cytoplasm of some cells, used for storage or digestion purposes in different kinds of cells; plant cells often contain a large central vacuole that stores water, proteins, and waste materials.
Types of vacuoles: Central vacuole, Contractile vacuole (in some fungi and protists), Storage vacuoles
Mitochondria – the organelle called the powerhouse of the cell.. generates ATP, consists of an outer membrane, an inner membrane (cristae) that supports electron transport and chemiosmotic synthesis of ATP, and a soluble matrix containing citric acid cycle enzymes
Chlorophyll - the primary type of light-absorbing pigment in photosynthesis
Thylakoids - an organized internal membrane composed of flattened disks, which contain the photosystems involved in the light-dependent reactions of photosynthesis
Grana - stacks of thylakoids
Endosymbiosis - theory that proposes that eukaryotic cells evolved from a symbiosis between different species of prokaryotes
Cytoskeleton - a network of protein microfilaments and microtubules within the cytoplasm of a eukaryotic cell that maintains the shape of the cell, anchors its organelles, and is involved in animal cell motility
Actin filaments (Microfilaments) - Smallest diameter of the three cytoskeletal elements; involved in cell motility and, along with myosin, part of myofilaments
Microtubules - in eukaryotic cells; a long, hollow protein cylinder, composed of the protein tubulin; these influence cell shape, move the chromosomes in cell division, and provide the functional internal structure of cilia and flagella
Intermediate filaments - an elaborate network in the cytoplasm of most cells
Centrosome - Microtubule-organizing center
Molecular motors - All eukaryotic cells must move materials from one place to another in the cytoplasm. Cells use the channels of the ER as an intracellular highway. Material can be moved using vesicles loaded with cargo moves along the cytoskeleton like it was a railroad t
Dynein(-)/kinesin (+) - Kinesin binds vesicles to the motor protein kinesin. The dynactin complex, binds vesicles to the motor protein dynein
3 Types of cell connections: 1. Adhesive junctions, 2. Septate / tight junctions, and 3. Communicating junctions
Vesicles - can move along tracks from the cell body to the end of the cell.
Created by: gxlxctic.tofu
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