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bio 3/4
structure and regulation of biochemical pathways
| Question | Answer |
|---|---|
| What is an enzyme? | Proteins that speed up specific reactions (catalysts) that binds to substrates to create the enzyme substrate complex. |
| What are the two ways enzymes can fit with the substrate? | Lock and Key method are when the active site and substrate fit together perfectly, and the induced fit model need the active site to have a conformational change in order for it to fit. |
| What is a biochemical pathway? | Sequence of reactions catalysed by different enzymes; product of each reaction becomes the substrate in the next reaction. |
| What is a catabolic reaction? | Breakdown of large molecules into smaller molecules creates an output of energy through breaking of bonds, and is an exergonic reaction. For example, aerobic and anaerobic respiration. |
| What is an anabolic reaction? | Builds a large molecule from smaller ones, input of energy as bonds are formed, and is an endergonic reaction. For example, photosynthesis. |
| What is irreversible inhibition? | Inhibitors with strong bonds with enzymes, denaturing of an enzyme by heat, changes in pH or other chemicals, and binding of poisons (eg. Some antibiotics bind irreversibly to bacterial enzymes). |
| What is reversible inhibition? | Bonds found between inhibitor and enzymes are weak (easily broken). |
| What is feedback inhibition? | When the amount of product is high, the pathway slows down (excessive product is inhibiting enzymes easily in pathways). |
| How does temperature affect the rate of enzymatic reactions? | Below enzymes optimum temperature (36-38 degrees), they do not function effectively. If it is above enzymes optimum temperature, the enzymes become inactivated and denature. |
| How does pH affect the rate of enzymatic reactions? | The availability of H+ ions can change ionic bonds that forms the tertiary structure of the protein. If pH is over optimal it will denature and the substrate will be unable to bind. |
| How does concentration of enzyme and substrate affect the rate of enzymatic reactions? | Increasing enzyme concentration will increase reaction rate, if you increase substrate concentration then the reaction rate will also increase. |
| What is a competitive chemical inhibitor? | A molecule that binds directly to the active site, blocking the substrate from binding, can be reversed. |
| What is a non-competitive chemical inhibitor? | A molecule that binds to an allosteric site of the enzyme, creating a conformational change in the enzymes active site, and the substrate cannot bind. |
| What are coenzymes? | A small, non-protein cofactor, most are carrier molecules such as NADH, NADPH and ATP that transfer elections to transfer energy. |
| How can coenzymes be loaded or unloaded? | Loaded forms means they are ready to donate a chemical group, proton or electron, ATP, . Unloaded forms means they are ready to accept a chemical group, proton or electron, ADP. They can be cyclically loaded and unloaded. |