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Biology Chapter 1

Stack #198066

QuestionAnswer
Metabolism all the chemical reactions that occur in a cell
Homeostasis maintenance of normal internal conditions in a cell or organism by self-regulating mechanisms
Living things: acquire materials and energy, respond,reproduce and develop, have adaptations,
Diversity of life tremendous diversity in form and function but underlying similarities reveal relatedness 1. dna 2. photosynthesis 3. respiration all organisms descended, or eveolved, from a common ancestor
ecological organization Population, community, ecosystem, biosphere
population individuals of the same species in a given area
community populations of different species in a given area
order of organization Small molecules, large molecules, cells, tissues,organs, organ systems, complex organisms
adaptations modifications that allow a species to live successfully in its environment
Underlying relatedness dna, photosynthesis, respiration
ecosystem interaction of communities with the abiotic environment
biosphere land, sea, air and all organisms on earth
how oragnisms are classified taxonomy, groups organisms into categories and explains eveolutionary relationships
Taxonomy Domain, Kingdom, Phylum, Class, Order, Family, Genus, Species
Three domains of living organisms Archaea - prokaryotic Bactieria - prokaryotic Eukarya - eukaryotic
prokaryotic unicellular, no membrane bound nucleus
eukaryotic unicellular or multicellular membrane bound nucleus
archaea live in extreme(aquatic) environments Anoxic (no oxygen) high salinity high temperature
anoxic no oxygen
eukarya is divided into four kingdoms Protista, Fungi, Anamalia, Plantae
Binomial classification (scientific names) Genus and Species Humans genus=Homo species=Homo Sapiens
Scientific Method Steps Observation, Question, Hypothesis, Experiment, Results, Conclusion
Scientific Theory when many experiments and observations support a theory
Experiments typically have two groups Treatment group Control group
Analysis by statistics Used in scientific experiments
What is matter anything that takes up space and has mass composed of elements such as Carbon and Hydrogen(cannot be broken down)
Composition of elements in Human Oxygen 65, carbon 18, hydrogen 10, Nitrogen 5, calcium 2, phosphorus 1.1, other elements including sulfur .9
composition of elements in earth's crust Oxygen 46.6, silicon 27.7, aluminum 8.1, iron 5, calcium 3.6, sodium 2.8, potassium 2.6, magnesium 2.1, other elements 1.5
mass number number of the neutrons and protons added together
atomic number number of protons
isotope atom with the same number of protons but different number of neutrons
decay the nucleus of an isotope can be unstable and may disintergrate or decay
decaying isotopes emit radiation
uses of radioactive isotopes tracers to track a substance, sterilize medical and dental instruments, kill cancer cells, carbon dating
octet when the outer valence shell is most stable when filled 8 electrons
molecule a group of atoms bound to one another usually with more than one element
compound a group of molecules
ions charged atoms(gained or lost electrons)
Ionic bonds bound together with charge
covalent bonds twoa toms sharing electrons to complete their valence shells
chemical reactions reactants and products
Photosynthesis 6CO2 + 6H20 -> C6H12O6 + 6O2
All organisms are __________ water 70-90 percent water
water all organisms are 70-90 % water, it's a life-supporting substance, it's a polar molecule
polar molecule unequal sharing of electrons within a molecule
within water Oxygen is slightly _______ negative
within water Hydrogens are slightly ________ positive
hydrogen bond is a bond between + H atom and a - atom
cohesion when water molecules cling together with hydrogen bonds
properties of water solvent, high surface tension, cohesive and adhesive, high heat capacity and high heat of vaporization, expands as it freezes- ice floats
what happens when water dissociates releases an equal number of ions... hydrogen ions(H+) Hydroxide ions (OH-) H - O - H ======== H+ + OH-
Acidic solutions have a ____ H+ concentration high
Acidic solutions release ______ when dissolved in water H+
Basic solutions have a _____ ___ concentration low H+
Basic solutions release _______ when dissolved in water OH-
ph The number of H+ ions in a solution
PH scale ranges from 0 (high acidity) to 14 (strong basicity)
neutral PH 7, tears, purewater
list of PH from greatest acidity to neutral hydrochloric acid 0, stomach acid 1, lemon juice 2, coca cola beer vinegar 3, tomatoes 4, black coffee 5, urine 6, saliva 6.9
list of PH from greates basisity to neutral sodium hydroxide 14, oven cleaner 13, bicarbonate of soda 12, ammonia 11, great salt lake 10, baking soda, stomach antacids 9, seawater 8, human blood 7.2
buffer chemicals that keep a PH within a given range by taking up extra H+ or OH- from solution
sodium bicarbonate buffer system regulating our blood
Organic molecules contain C and H
Inorganic chemistry chemistry of the nonliving world
Organic chemistry chemistry of the living world
The carbon atom 6 electrons 4 in outer shell, can bond with 4 other elements. Shares electrons with other elements found in living organisms(CHNOPS)
hydrocarbons stable chains of carbon bound to H, hydrophobic
isomers carbon molecules with the same number and kind of atoms but in different arrangements (eg galactose and fructose are isomers of glucose)
heptane 7 carbon straight chain gas burns rapidly
isooctane 8 carbon branched chain burns slower
carbon skeleton or backbone carbon chain of an organic molecule
Functional groups attacked functional groups on carbon chain determine reactivity of that molecule
Hydroxyl Functional group with structure R - O - H hydrophilic alchohols, sugars
Carboxyl functional group with structure O || R-C | O | H amino acids, fatty acids
Amino H | R-N | H Amino acids, proteins
sulfhydryl R-S-H Amino acid, cysteine, proteins
phosphate H | O | R-O -P- O-H || O ATP, nucleic acids
What organic mulecules are cells made of? What do cells need to survive? answer question
Orangic Molecules of Cells four categories of macromolecules Carbohydrates, Lipids, Proteins, Nucleic acids
dehydration reaction synthesis
hydrolysis reaction break down
Synthesis Monomer with OH bonds creates polymer with O bonds plus water. (dehydration reaction)
break down polymer with O bonds adds waters and creates Monomer with OH bonds (hydrolysis reaction)
carbohydrates source of energy, provides structure
monosaccharide single sugar molecule
disaccharide two sugar molecules bound together
monosaccharides glucose, ribose and deoxyribose
glucose an important energy source monosaccaride
ribose and deoxyribose five carbon sugars(found in RNA and DNA) monosaccarides
Disaccharides Maltose, sucrose
maltose required for alcohol production during fermentation disaccharide
sucrose table sugar disaccharide
polysaccharides polymers of monosaccharides, short term energy storage molecules, plants-glucose as starch, animals-glucose as glycogen
starch Polysaccharide glucose used as short term storage for plants
glycogen polysaccharide glucose used as short term storage for animals
polysaccharides also function as ____ _____ structural molecules
cellulose polysaccharide in cell walls of plants(most abundant polysaccharide on earth)
chitin forms the exoskeleton of crabs, lobsters and insects
Lipids insoluble in water (hydrophobic), fats and oils, phospholipids, sterols
Fats and oils used for long term energy storage Lipid
Phospholipids components of the membranes that surround cells Lipid
Sterols or steroids -includes hormones (chemicals that send signals throughout the body) Lipid
Fats And Oils contain 2 subunits 1. Glycerol: three polar -OH groups 2. Fatty acids: long chain hydorcarbons
Triglyceride three fatty acids attached to a glycerol = "fat"
Glycerol three polar OH groups one of 2 subunits of fats and oils
H | H-C-OH | | H-C-OH | | H-C-OH | H glycerol (drop the 3Hs of glycerol and stick them to the now straight fatty acid ends which loses it's HO) Fatty lost a HO
O H H H \\ | | | C-C-C-C ect... -R / | | | HO H H H fatty acids (takes 3 to do Glycerol + 3 fatty acids = a Fat plus 3 H20
Fatty Acids contain ____ most contain 16 or 18 carbon atoms.
Saturated fatty acids no double bonds between C atoms
Unsaturated fatty acids at least one double bond between C atoms
unsaturated fatty acids are what geometry thing a bend caused by the double carbon bond
saturated fatty acids are what geometry thing straight (has carboxyl group on end then just straight no double C bonds
Fatty acids types of Oil in order Canola oil, safflower oil, olive oil, beef fat, butter, coconut oil however saffolower oil has most polyunsaturated fat cholesterol is only present in beef fat then double in butter
phospholipids have what head and tail a polar hydrophilic phosphate group(head), a nonpolar hydrophobic lipid group(tail)
R | O=P-O | O | phosphate group (polar head of a phospholipid)
Sterols 4 fused hydrocarbon rings with different functional groups attached
Cholesterol animal cell membranes
testosterone and estrogen sex hormones
anabolic steroid synthetic testosterone
LDL vs HDL cholesterol Find Answer
H3C CH3 \ /\/\/ | \CH3 | (CH3) HR HR Hydrocarbon ring, HR / HO cholesterol
OH | (CH3) HR HR Hydrocarbon ring, HR // O testosterone
OH | (CH3) HR HR Hydrocarbon ring, HR / HO estrogen
protein functions 1. Support keratin and collagen provide structure 2. Metabolism - enzymes speed up chemical reactions. 3. Transport hemoglobin transports oxygen 4. Defense: antibodies defend 5. Regulation: insulin regulates glucose levels 6. Motion Actin and Myosin
Keratin and _________ keratin and collagen provide structure (support function of proteins)
Metabolism enzymes which speed up chemical reactions (metabolism function of proteins)
Transport hemoglobin transports oxygen (transport function of proteins)
Defense antibodies defend the body from disease (defense function of proteins)
Regulation insulin regulates glucose levels (regulation function of proteins)
Motion Actin and Myosin in muscle cells allow muscles to contract (motion function of proteins)
Amino Acids subunits of proteins
Three elements to Amino Acids structure amino (-NH2) group carboxyl (-COOH) group R (Residual) group
H | H2N-C-COOH | R the three elements of amino acid structure
How many different amino acids are there? 20 different ones
Peptides two or more amino acids linked together
Polypeptide a chain of many amino acids joined by peptide bonds
primary structure proteins amino acid sequence
secondary structure polypeptide can change to a coil in a spiral helix or fold into a pleated sheet
secondary structure can also (tertiary structure) fold and twist into a rounded 3d shape called tertiary structure
quaternary structure more than one polypeptide
when a protein loses all the levels of structure it is _________ denatured
Nucleic Acids DNA, RNA polymers of nucleotides
DNA dexyribonucleic acid = genetic material
RNA ribonucleic acid = helper to DNA
What are Nucleotides 3 parts? a phosphate group PO4 negative a 5 carbon sugar a nitrogen containing base
P nitrogen containing base \ / Sugar nucleotide
DNA 4 bases G,C,A,T G with C A with T
might need to draw the fuckin 4 DNA bases wtf
RNA 4 bases G, C, A, U Uracil is RNA only
G Guanine
C Cytosine
A Adenine
T Thymine
Structural differnces between DNA and RNA the 5 carbon sugar -deoxyribose in DNA -Ribose in RNA 2)DNA is double stranded RNA is single stranded 3)DNA has Thymine(T) RNA has Uracil(U)
The DNA is present in a ____ _____ triplet code
In DNA every 3 bases stands for ___ ___ ___ one amino acid
Current uses of DNA extraction human genome project paternity tests crime scene investigations diversity and evolutionary studies in animal biology
What is the relationship between Proteins and Nucleic Acids Order of amino acids dtermines a protein shape and function. DNA = instructions of sequence of amino acids
errors in DNA can change function of encoded protein example: sickle cell anemia
cell theory all organisms are composed of cells cells come only from preexisting cells
what is the structure of a cell membrane? Plasma membrane: phospholipid bilayer
Phospholipid bilayer -polar heads face twoard the inside and outside of cell(hydrophilic) -nonpolar tails face inward(hydrophobic)
how do substances cross membranes? plasma membrane is selectively permeable movement of some substances via diffusion(O2, CO2, water) Membrane protein carriers
types of membrane proteins Channel proteins, transport proteins, cell recognition proteins, receptor proteins, enzymatic proteins, junction proteins
channel proteins simple protein pores type of membrane protein
transport proteins binds with substances to assist movement type of membrane protein
cell recognition proteins glycoproteins with several functions (eg recognition of pathogens) type of membrane protein
Receptor proteins can only bind specific signal molecules type of membrane protein
Enzymatic proteins carry out chemical reactions type of membrane protein
junction proteins connect cells to each other and allow communication type of membrane protein
Prokaryotic cells lack membrane-bound organelles
Eukaryotic cells have membrane-bound organelles
what were among the first organisms on the earth that live in a wide variety of environments Prokaryotic Cells bacteria, archea
bacteria, archea prokaryotic cells
bacteria some cause harmful diseases some are beneficial decompose dead remains manufacture chemicals for human use important component on human foods
Bacterial structure Cell membrane, a cell wall and a capsule(polysaccharides) DNA in the Nucleoid robosomes
Flagella movement (bacterial structure)
Fimbriae small bristlelike fibers that allow attachment to surfaces (bacterial structure)
Sex Pili transters DNA from one bacteria to another (bacteria structure)
Eukaryotic cells has organelles, and includes a membrane bound nucleus
organelles membrane-bound inner compartments, part of eukaryotic cells
Four categories of organelles: 1. Nucleus and ribosomes 2. endomembrane system 3. energy-related organelles 4. cytoskeleton
Nucleus communicates with ______ to control protein systhesis ribosomes
Nucleus contains ________ contains chromatin which is composed of DNA (also some protein and RNA)
Chromatin strands condense during cell division to form visible _______ chromosomes
nuclear membrane seperates nucleus from cytoplasm
nuclear pores RNA out of nucleus proteins into the nucleus
Role of RNA Messenger RNA (mRNA), Ribosomal RNA (rRNA), Transfer RNA (tRNA)
Messenger RNA -carries information for amino acid sequence -helper to DNA (mRNA)
Ribosomal RNA rRNA forms subunits of ribosomes produced in nucleolus assembled in the cytoplasm
Transfer RNA tRNA Carries amino acids to ribosomes
Ribosomes are found in different locations cytoplasm (free ribosomes) attached to endoplasmic reticulum (ER)
Proteins made from free ribosomes are used in the _____ cytoplasm
Proteins made from attached ribosomes (to ER are deposited in the ________ endoplasmic reticulum
four processes of ribosomes (explain how it works) 1 and 2 1. mRNA is produced in teh nucleus but moves through a nuclear pore into the cytoplasm. 2. In the cytoplasm the mRNA and ribosomal subunits join, and polypeptide synthesis begins.
four processes of ribosomes (explain how it works) 3 and 4 3. After a ribosome attaches to a receptor on the ER the polypeptide enters teh lumen of the ER. 4. At termination, the polypeptide becomes a protein. The ribosomal subunits disengage, and the mRNA is released.
Endomembrane system: four components (in order of how proteins and lipids are made and processed) nuclear membrane endoplasmic reticulum (ER) golgi apparatus vesicles
Endoplasmic reticulum system of membranous channels and flattened vesicles packages products in transport vesicles rough ER: with ribosomes synthesizes proteins smooth ER synthesizes lipids
rough ER has ribosomes and synthesizes proteins
smooth ER synthesizes lipids
Golgi Apparatus -consists of numerous flattened vesicles -receives protein transport vesicles from ER and packages them in new vesicles -directs new vesicles to protein's location
lysosomes Golgi vesicles that digest molecules within the cell -participate in apoptosis (programmed cell death)
apoptosis programmed cell death
vacuoles membranous sacs larger than vesicles. -vacuoles can store nutrients, ions, or other molecules
Energy related organelles Mitochondria, chloroplasts
Mitochondria -in all eukaryotic cells -break down carbohydrates to produce adenosine triphosphate(ATP)
Chloroplasts -in photosynthetic eukaryotes -use solar energy to synthesize carbohydrates (via photosynthesis)
4 things about chloroplasts -in photosythetic organisms -site of photosynthesis -surrounded by two membranes (inner and outer) -large inner space is the stroma
Stroma contains two components enzymes thylakoids (stroma is the large inner space of a chloroplast
Thylakoids disk like stacks (grana) containing pigments that capture light
Mitochondria the power house of a cell (ATP) -surrounded by a double membrane -cristae = folds of inner membrane (increase surface area) encloses matrix(space) -site of cellular respiration: produce ATP energy
the Cytoskeleton a network of protein filaments and tubules(from nucleus to plasma membrane) maintains cell shape
the three components of cytoskeleton Actin filaments microtubules intermediate filaments
Actin filaments supports the cell (and microvilli) involved in muscle contraction and cell division
Microtubules centrosome organizes center of cells
intermediate filaments intermediate in size support nucleus and plasma membrane
Centrioles -short cylinders in the centrosome -involved in chromosome movement in cell division
Cilia and Flagella hairlike projections for movement differ in size but similar in construction
Outside the Eukaryotic Cell most cells have external or extracellular structures (junctions)
Junctions between cells three types: Adhesion junctions, tight junctions, gap junctions
Adhesion junctions: connected by intercellular filaments. In heart, stomach and bladder.
Tight junctions connect cells like zippers. -kidney cells
Gap junctions form when two identical plasma membrane channels join. -heart cells and smooth muscle cells
extracellular matrix is a meshwork of proteins and plysaccharides. eg collagen and elastic fibers examples cartilage: very flexible bone: hard (mineral salts deposited outside cell)
be able to label a diagram of cell do it
Energy is the capacity to do work.
Potential energy stored energy
Kinetic energy energy of motion
where does energy come from the sun
measuring energy in joules food energy in calories
calorie amount of heat required to raise the temp of 1 g of water 1 degree C food kilocalories 1000 calories = 1 calorie
Energy transformation: Two laws of thermodynamics energy conservation, entropy= the tendency toward disorder
Energy conservation first law of thermodynamics, -energy cannot be created nor destroyed, but can change from one form to another
Entropy 2nd law of thermodynamics, -energy transformations result in a loss of usable energy (as heat) -heat is disordered (entropy)
where does cellular energy come from ATP (adenosine triphosphate)
ATP structure -sugar ribose -nitrogenous base adenine -3 phosphate groups (energy stored in phosphate bonds)
ATP cycle -continual breakdown and regeneration - from carbohydrates and fats (the breakdown of glucose by cellular respiration)
ADP + P ATP Cycle
Energy flow Chloroplasts use solar energy for photosynthesis Cellular respiration (energy) produced in mitochondria
metabolic pathways E1 E2 A -> B -> C reactants or substrates (A,B) products (B,C) Enzymes (E) catalyze chemical reations
activation energy -molecules must be activated for a chemical reaction -energy of activation (Ea) -Enzymes lower Ea
The active site of an enzyme -substrate binds in a lock and key fashion -induced fit model -slight change in active site when substrate attaches
enzyme inhibition occurs when an active enzyme is prevented from binding to a substrate by an inhibitor- -cyanide blocks ATP synthesis -Penicillin inhibits a specific bacterial enzyme
feedback inhibition -used to regulate metabolic pathways -abundant products shut the synthesis pathway off
cell Transport -plasma membrane is selectively permeable -substances can enter cells in three ways 1. passive transport 2. Active transport 3. Bulk transport
Passive transport No energy required Simple diffusion- solute moves from high to low concentration occurs until equilibrium is reached
Facilitated diffusion passive movement from high to low concentration with the assistance of membrane proteins
Osmosis passive diffusion of water solvent (water) moves across the membrane (instead of solute)
Isotonic Solution normal cells (red blood cells) normal cell (plant cell)
Hypotonic solution Red blood cells burst plant cells become normal turgid cell
Hypertonic solution shriveled blood cells Plant cells shrink from cell wall=plasmolysis
Active transport energy required- -molecules move against their concentration gradient (low to high concentration) -required energy and a membrane protein (pump) -mitrochondria provides ATP
Bulk Transport Macromolecules -transported across membranes in vesicles -macromolecule transport in a vesicle
macromolecule transport in a vesicle out of a cell exocytosis
macromolecule transport in a vesicle into a cell endocytosis
Types of endocytosis -phagocytosis- large particle eg white blood cell engulfing bacteria -pinocytosis a liquid or small particle -Receptor-mediated endocytosis, receptor protein binds to a molecule (liver cells take in dietary cholesterol from blood)
Photosynthesis transforms solar energy into chemical energy (carbohydrates)..... Occurs in Chloroplasts.... Plants, algae, cyanobacteria.... Food and fuel (coal, wood)
Flowering Plants Green portions of plants carry out photosynthesis.... CO2 enters leaves through stomata..... Roots absorb water.... CO2 and water diffuse to the chloroplast..
Chloroplasts site of photosynthesis, surrounded by two membranes (inner and outer).. The large inner space is the stroma.
What two components do the stroma contain? -enzymes, -thylakoids
Thylakoids disk-like stacks (grana) containing pigments that capture light
6C02(carbon dioxide) + 6H2O(water) ----> C6H12O6(glucose) + 6O2)oxygen CO2 undergoes reduction(loses an oxygen) H2O undergoes oxidation(gains an oxygen)
Photosynthesis involves two sets of reactions: -Light reactions -Calvin cycle reactions (or "carbon reactions")
Light reactions: -Chlorophyll absorbs solar energy, which energizes electrons.... -water reactant; oxygen produced...... -produces ATP and NADPH
Calvin cycle reactions: -CO2 is taken up by a substrate (RuBP).... -ATP and NADPH (from light reactions) reduce CO2 to a carbohydrate (glucose)
visible light form of energy that gets through the earth's atmosphere
Solar energy wavelength and energy content
Photosynthetic pigments chloroplast pigments absorb and reflect visible light
Two primary Photosynthetic pigments: 1. Chlorophylls.. 2. carotenoids...
chlorophylls one of two primary phtosynthetic pigments which: -absorb violet, red and blue wavelengths... -reflect green
Carotenoids one of two primary phtosynthetic pigments which: -absorb violet-blue-green range... -reflect yellow-orange wavelengths..
summer colors: Warm weather lots of daylight much chlorophyll is produced, leaf absorbs all colors of light but green and green is reflected in the leaf.
Fall colors Cool weather, little sunlight, little chlorophyll is produced.. leaf absorbs all colors but yellow to orange... yellow to orange is reflected in the leafs.
The light reaction pathway uses two photosystems PSII and PSI
A photosystem consists of: -pigment complex... -special chlorophyll pigment (reaction center).. -electron acceptor molecules..
Photosystem II and I -absorb solar energy.. -energized electrons passed to electron acceptors in the electron transport train.. -produce ATP and NADPH
Steps of light reactions: PSII - splits a water molecule to remove electrons and produce oxygen... energized e- sent to e- acceptors down an electron transport chain.. (PSI) e- lost from PSI are replaced from electron transport chain.. then passes e- along with H+ to NADP->NADPH
PSII, PSI, and the electron transport chain are located within the ____ ____ thylakoid membrane
How is ATP in photosynthesis formed? Hydrogen Ion gradient is formed in the thylakoid space... -oxidation of water by PSII adds H+.. e- energy from electron transport chain is used to pump H+.. -H+ gradient is used to produce ATP.. H+ released through ATP synthase complex
NADPH production: NADPH formed by NADP+ accepting electrons and picking up H+ after PSI
Calvin Cycle Reactions -series of reactions that produce carbohydrates from CO2
Three steps of Calvin Cycle Reactions 1. CO2 fixation.. 2. CO2 reduction... 3. Regeneration of ribulose-1,5-bisphosphate (RuBP)
Key molecules of the Calvin Cycle -RuBP which is ribulose 1, 5-bisphosphate.. -3PG which is 3-phosphoglycerate.. -BPG which is 1, 3-bisphosphoglycerate.. -G3P which is glyceraldehyde-3-phosphate..
What happens during 1. Carbon Dioxide Fixation? -3CO2 from the air is attached(fixed) to 3 RuBP.. Then the enzyme Rubisco (RuBP carboxylase oxygenase) splits the 6 carbon molecule to two 3-carbon molecules
What happens during 2. Carbon Dioxide Reduction? a series of reactions.. -electrons and energy from NADPH and ATP convert 3-carbon molecules to a carbohydrate. WHERE DOES NADPH and ATP COME FROM?
What happens during 3. Regeneration of RuBP? -product of the calvin cycle= glyceraldehyde-3-phosphate (G3P).. -G3P is used to make glucose.. -G3p is also used to make RuBP (required for the fixation of carbon dioxide)
Created by: lunch7
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