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Lipids and Membranes
Biochemistry, Medicine, Phase 1
Term | Definition |
---|---|
Components of plasma membrane structure | hydrophobic regions, hydrophilic regions, proteins, glycoprotein, carbohydrate side chain |
Carbohydrate side chain | will usually face out into the extracellular space |
Membrane composition | varies according to cellular location |
Carbohydrates only found in which membrane | plasma membrane; 8% |
1:1 protein protein:lipid ratio | plasma membrane, out mitochondrial membrane |
3:1 protein: lipid ratio | inner mitochondrial membrane; nuclear membrane |
Most common lipid is cell membrane | phos/choline |
Other lipids found in membranes (Varying degrees) | phos/serin, spingomyel, cholesterol, others |
Lipids | insoluble in water, soluble in fat and organic solvents |
Function of lipids | energy stores (triacylglycerol), precursor for vitamins and hormones, bile acids (cholic acid), membrane structure (phospholipids) |
Phospholipids | essential and major component of all membranes; |
Hydrophilic component of a phospholipid | composed of polar head group (serine, choline, ethanolamine, inositol) attached to a backbone of glycerol through a phosphate group |
Hydrophobic component of a phospholipid | two fatty acyl side chains linked to the glycerol backbone via ester bonds |
Amphipathic | phospholipids f.e.g; both polar and nonpolar components |
Common head groups found in phospholipids | choline, serine, ethanolamine, inositol |
Sphingomyelin | lacks a glycerol backbone; component of neural membrane of myelin; polar head is choline attached to the phosphate group; phosphate group directly attaches to ceramide which is connected to a fatty acyl chain (only one) |
Shingosine | ceramide + fatty acyl chain |
Glycerol backbone | CH2, CH, CH2 (across), two O down which attach to the fatty acid chains |
Each glycerophospholipid | contains two fatty acids |
Fatty acids can be | fully saturated, mono-unsaturated and poly-unsaturated |
Fully saturated | no double bonds (number of carbon atoms in the fatty acid: number of double bonds) |
Stearic acid | 18:0; 18 carbon atoms in fatty acid, no double bonds, SFA |
Palmitic acid | 16:0; 16 carbon atoms in fatty acid, no double bonds, SFA |
Myristic acid | 14:0; 14 carbon atoms in fatty acid, no double bonds, SFA |
Mono-unsaturated | one double bond, MUSFA |
Oleic acid | 18:1; 18 carbon atoms; 1 double bond, MUSFA |
Poly-unsaturated | several double bonds |
Arachidonic acid | 20:4; 20 carbon atoms, 4 double bonds; PUSFA |
Delta | indicates position of double bonded in relation to the carboxyl group ; counting from the carboxyl terminal |
Kink | produced by a double bond in a fatty acid |
Cholesterol | hydroxyl group on cholesterol interacts with the polar head groups of the membrane phospholipids and sphingolipids; the bulky steroid and the hydrocarbon chain are embedded in the membrane, alongside the nonpolar fatty-acid chain of the other lipids. |
Lipid bilayers are asymmetrical | two halves of the bilayer have different membrane composition |
Phospholipids facing extracellular environment | phosphatidylcholine; sphingomyelin |
Phospholipids facing intracellular environment | phosphatidylerserine, phosphatidylethanolamine |
Generation of phospholipids | within the cell; requires an enzyme to get them in the right place in the membrane |
Glycolipids | are lipids with a carbohydrate attached |
Fluidity | the ease in which lipid molecules move about in the plane of bilayer - important in the regulation of membrane function (e.g. movement of proteins, signalling, exocytosis) |
Regulation of fluidity | fatty acids are crucial regulators of fluidity, determined by chain length and degree of saturation |
Short chain fatty acids | reduce the tendency of hydrocarbon chains to interact and hence increase fluidity |
Kinks in unsaturated fatty acids | result in less stable van der Waals interactions with other lipids and hence inrease fluidity |
High cholesterol | content restricts the random movement of polar heads, orders the lipid bilayer and decreases fluidity - rich in highly ordered regions of the membrane lipid rafts |
Impaired fluidity | can damage cells; increased cholesterol content of red blood cell membranes is associated with severe liver diseases e.g. Cirrhosis |
Abnormal cholesterol levels | when content of red blood cells is increased by 20-60% above normal, leading to decreased fluidity; alters cell shapes; impairs oxygen transport, destruction of red blood cells and anaemia |
Structural cell membrane proteins | cell-cell contact, cytoskeletal organisation |
Receptor cell membrane proteins | signal transduction and recognition |
Ion channel cell membrane proteins | maintenance of ion gradients, transmission |
Transporter cell membrane proteins | important and export substances |
Enzyme cell membrane proteins | catalysis |
Actin, spectrin, ankyrin | structural cell membrane proteins |
Insulin receptor, glucagon receptor | receptor cell membrane proteins |
Acetylcholine (nicotine), GABAa | ion channel cell membrane proteins |
Glucose and glutamate transporters | transporter cell membrane proteins |
Adenylyl cyclase | enzyme membrane proteins |
Sramblase | |
Integral (intrinsic) proteins | embedded in lipid bilayer, most span the entire bilayer; transmembrane spanning domains are either alpha helices or beta sheets; can span the membrane completely or not properly but are embedded within the membrane; channel or transporter |
Anchored proteins | anchored to membrane by covalently bound fatty acids |
Peripheral (extrinsic) proteins | attach to membrane surface by ionic interactions with integral proteins or with polar head group of phospholipids |
Integral membrane protein (2) | |
Anchored membrane proteins (2) | not deeply embedded in the bilayer by covalently linked to fatty acid chains (e.g. myristic or palmitic acid) or on the cell surface to a glycolipid |
Alkaline phosphate | enzyme; example of a glycolipid anchored protein |
RAS | example of fatty acyl anchored protein; signalling protein; relays information from the cell membrane |
Peripheral proteins (2) | attach to the membrane surface by interactions with other membrane proeins or with the polar head group of phospholipids |
Spectrin | important structural protein; on the cytoplasmic surface of erythrocytes; interacts with other proteins such as ankyrin |
Phospholipase A2 | peripheral protein; binds to bilayer to cleave fatty acids from phospholipids |
Sites of action of phospholipases | polar head (choline, ethanolomaine, myo-inositol) from phosphate group (PLD); phosphate group from glycerol backbone (PLC); remove the fatty acids (PLA1 - usually saturated), (PLA2, usually unsaturated) |
High salt, urea treatment | removes peripheral proteins from the bilayer |
Detergent (protein solution) | removes peripheral, anchored and integral proteins of the bilayer |
Phospholipase | removes peripheral and anchored proteins of the bilayer; peripheral proteins (PLA, 2) |
Detergents | are preferred method over organic solvents; like soaps; similar structure of phospholipids with a hydrophilic head and a hydrophobic tail; detergent monomers form detergent polymer micelles |
Micelles | polymer of detergent monomers |
Micelles + membrane proteins | results in water-soluble-lipid-detergent complex and water-soluble-lipid-detergent micelles; removing detergent and adding phospholipids back to proteins allows you to study your protein of interest and its function |