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ID pathogens
ID pathogens (bolded pathogens from Leonard's table)
| Organism | Gram Stain | Metabolism, Shape, Arrangement | Description | Treatment |
|---|---|---|---|---|
| Enterococcus | Gram Positive | Aerobic Cocci in pairs or short chains | Common human pathogen previously known as Group D Streptococcus (normal intestinal flora). | Generally difficult to treat. E. faecalis: ampicillin +/- gentamicin E. faecium: vanco VRE: linezolid, dapto |
| Staphylococcus | Gram Positive | Aerobic Cocci arranged in clusters | Common human pathogen that is everywhere in the environment and normal human flora (particularly skin). | S. aureus MSSA: cefazolin (or vanco if anaphylactic) MRSA: vancomycin, televancin/oritavancin/dalbavancin, tigecycline/doxycyline/minocycline, quinupristin-dalfopristin, fosfomycin, clindamycin, bactrim |
| Streptococcus | Gram Positive | Aerobic Cocci arranged in chains and pairs | Common human pathogen, part of normal flora (particularly oral and URT) and many clinically important pathogens. Coag negative Staph is typically a contaminant. Can be grouped by types of hemolysis. | Penicillin is goal |
| Bacillus | Gram Positive | Aerobic Rods | Common environmental bacteria. B. anthracis is cause of Anthrax | Cipro |
| Corynebacterium | Gram Positive | Aerobic Rod | Normal skin flora. Mostly innocuous. Corynebacterium disease is diptheria, common clinical culture contaminat | DAT and PCN/erythromycin |
| Listeria | Gram Positive | Aerobic Rod | Most commonly associated with meningitis in humans. Commonly transmitted via contaminated food. | Ampicillin |
| Clostridium | Gram Positive | Anaerobic Rod | Important human pathogen. Can cause a range of disease including botulism, food poisoning, gangrene, tetanus, and others. | N/A |
| Lactobacillus | Gram Positive | Anaerobic Rod | Normal human flora that is rare cause of disease. Commonly found in fermented food such as yogurt. Commonly used as a probiotic. | N/A |
| Clostridiodes | Gram Positive | Anaerobic Rod | Important human pathogen. Causes antibiotic associated diarrhea (C. Diff) | Vanco, fidaxomicin, metronidazole |
| Mycobacterium | Gram Positive | Acid-Fast | Commonly associated diseases include TB and leprosy. | N/A |
| Neisseria | Gram Negative | Aerobic Cocci | Two pathogenic species cause both STI and meningitis | Ceftriaxone |
| Acinetobacter | Gram Negative | Aerobic Rod | Ubiquitous soil bacteria. Increasingly important nosocomial pathogen. | Tends to be extensively antibiotic resistance and difficult to treat. If carbapenem resistant --> sulbactam/durlobactam carbapenem |
| Citrobacter | Gram Negative | Aerobic Rod | Can be found in soil, water, and human GIT. Can cause sepsis and UTIs | Cefepime preferred. NO 3rd gen cephalosporins due to AmpC induction |
| Enterobacter | Gram Negative | Aerobic Rod | Enteric colonizer most commonly in urinary tract and respiratory tract. Can cause nosocomial infection in humans. | Cefepime preferred. NO 3rd gen cephalosporins due to AmpC induction |
| Escherichia | Gram Negative | Aerobic Rod | Enteric colonizer. Important cause of a variety of infections in humans. | N/A |
| Haemophilus | Gram Negative | Aerobic Rod | Normal human flora. Important cause of invasive disease in humans including RTI and meningitis in children. | N/A |
| Klebsiella | Gram Negative | Aerobic Rod | Important cause of infections in humans. Most commonly nosocomially acquired pneumonia, UTI, and bacteremia. | Lots of options |
| Legionella | Gram Negative | Aerobic Rod | Normally lives in water. Important cause of both community and nosocomial pneumonia. Causes Legionnaires disease. | N/A |
| Moraxella | Gram Negaitve | Aerobic Rod | Usually in respiratory tract. Important cause of respiratory tract infections including pneumonia, otitis media, and sinusitis. | N/A |
| Proteus | Gram Negative | Aerobic Rod | Important cause in a variety of human infections, most notably UTI | N/A |
| Pseudomonas | Gram Negative | Aerobic Rod | Important nosocomial human pathogen causing a variety of infections. | Piperacillin, ceftazidimine, cefepime, ceftolozane-tazobactam, cefiderocol, meropenem/doripenem/imipenem, tobramycin/gentamicin/amikacin, aztreonam, cipro/levofloxacin, plazomicin, polymyxin |
| Salmonella | Gram Negative | Aerobic Rod | Important cause of foodborne illness | Ceftriaxone or Cipro if high risk |
| Serratia | Gram Negative | Aerobic Rod | Typically in the bloodstream, respiratory and urinary tract. Causes nosocomial infections. | N/A |
| Stenotrophomonas | Gram Negative | Aerobic Rod | Ubiquitous in water and soil. Causes opportunistic nosocomial infections mostly in immunosuppressed pts. Mostly causes RTIs, UTIs, and bloodstream infections, often associated with some sort of device. | Bactrim |
| Bacteroides | Gram Negative | Anaerobic Rod | Constitutes ~30% of total colonic bacteria. Opportunistic, causing primarily intraabdominal infections. Fairly resistant to antibiotics (b-lactams, aminoglycosides, erythromycin, tetracyclines). Most clinically important species in B. fragilis. | N/A |
| Borrelia | Gram Negative | Spirochete | Tick-borne illness. Borrelia burgdorferi is the cause of Lyme disease | Doxycycline |
| Campylobacter | Gram Negative | Spiral | Important cause of food-borne illness | N/A |
| Chlamydia | ??? | Obligate intracellular | Common cause of STIs, atypical CAP. Leading cause of infectious blindness worldwide. | Doxycycline |
| Helictobacter | Gram Negative | Helix | Most commonly encountered species is H. pylori which is strongly associated with peptic ulcers, gastritis, and stomach cancer | Combo therapy |
| Mycoplasma | Doesn't stain | Lacks cell wall | Important cause of atypical CAP. Resistant to many antibiotics that target cell wall. | Resistant to beta-lactams |
| Rickettsia | Gram Negative | Variety of morphologies. Obligate intracellular | Causes variety of tick-borne illnesses like Rocky Mountain Spotted Fever. Generally susceptible to tetracyclines. | Doxycyline |
| Treponema | ????? | ????? | Cause disease such as syphilis. | PCN |