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MLS 334 exam 1
| Question | Answer |
|---|---|
| What are the 4 steps of the microbiology lab? | Obtain the specimen, plate it to media, identify what is growing, and perform antimicrobial susceptibility testing to determine what antibiotics can be used. |
| what do incubators do? | combine different temperatures and CO2 concentrations to create different environments for optimal growth. |
| what are the most common incubators? | 37C with CO2, 35C with ambient air, anaerobic jars or chambers and 30C with ambient air. |
| how are wound cultures incubated? | on BAP, CHOC and CAN media and incubated in 37C CO2, and MAC in 35C ambient |
| how are urine cultures incubated? | on BAP and MACmedia and are both incubated at 35C ambient |
| how are fungus cultures incubated? | plates are incubated in 30C ambient |
| what is assessed on 4x? | larger organisms and parasites |
| what is assessed on 10x? | the quality of the specimen |
| what is assessed on 40x? | the quantitation of WBC and RBC |
| what is assessed on 100x? | the identification and quantification of bacteria |
| when should the condenser be down? | for wet preps |
| when should the condenser be up? | gram stained and other stained specimens |
| what is a rapid biochemical test? | a test performed after the initial culture and gram stain to rapidly identify different groups of bacteria to help guide what testing should be done next. |
| what tests are included under the rapid biochemical test? | catalase, coagulase, oxidase, PYR |
| list routine media | BAP, MAC, CHOC, CAN, Thio |
| what does catalase test do? | identifies if the bacteria contains the enzyme catalase. The catalase enzyme breaks down hydrogen peroxide into oxygen and water which creates a rapid production of bubbles (positive). Used primarily to differentiate staph from strep. |
| what does the coagulase test do? | identifies if the bacteria contains the enzyme coagulase. Converts fibrinogen to fibrin and results in clot formation or clumping. differentiates staph aureus from other coagulase negative staph species. |
| what does oxidase test do? | identifies if the bacteria contains the enzyme cytochrome-C oxidase. A blue/purple compound is produced when tetramethyl-para-phenylenediamine reacts with the cytochrome-C oxidase. Differentiates nonfermenting gram negative rods. |
| what does the PYR test do? | identifies if the bacteria contains the PYR enzyme. Produces a red/ pink color to identify group A strep. |
| define taxonomy | the orderly classification and grouping of organisms |
| define classification | the arrangement of organisms into groups |
| nomenclature | assigning names to various taxonomic rankings for each microbial species |
| how is phenotype assessed? | through media, gram stains, morphology, biochemical characteristics, and antimicrobial resistance patterns |
| what are the 4 main types of pathogens that cause human disease | bacteria, fungi, viruses and parasites |
| define infection | invasion and multiplication of microorganisms within a host |
| where is normal flora found | skin, URT, GI, female genital tract |
| recall the three ways an infectious disease can be classified | microbiological (pathogens or causative agent), clinical (clinical manifestation), epidemiological (transmission, reservoir) |
| list the chain of infection | pathogen, reservoir, portal of exit, mode of transmission, portal of entry, susceptible host |
| define commensalism | microorganism benefits, host is not harmed |
| define mutalism | both microorganism and host benefit |
| define carrier | not harming host but can be passed to someone else |
| define transient microbiota | microbes that occupy the body for a short amount of time |
| define resident microbiota | microbes that have established 'residence' |
| define opportunistic pathogen | host resistance low an generally do not cause disease |
| define iatrogenic infection | infections from medical treatments or procedures |
| what are the antibacterial substances | fatty acids, lysozyme, and bile |
| what are the body sites that contain normal flora | skin and mucous membranes, upper respiratory, GI, outer opening of urethra, external genitalia, vagina, external ear and canal, external eye |
| what body sites are sterile? | internal organs and tissue, fluids within organ or tissue such as blood, urine and CSF |
| describe skin flora | skin surface and hair follicles, apocrine sweat glands. The normal flora colonzies the skin to prevent pathogens from forming. |
| list the common skin flora | candida spp., micrococcus spp., staphylococcus spp., clostridium spp., propionibacterium spp., diphtheroids |
| describe mouth flora | supports anaerobic growth with low oxidation reduction potential, buccal mucosa and tooth surface. Microorganisms produce acids which can lead to tooth decay. |
| list the common mouth flora | streptococcus mitis, streptococcus sanguis, streptococcus salivarius, streptococcus mutans |
| describe respiratory flora | lower respiratory tract normally considered sterile and ciliary epithelial cells and mucous help protect |
| list the common flora of respiratory tract | staph aureus, staph epidermidis, diphtheroids, haemophilus, streptococcus spp. |
| describe GI flora | composed of esophagus, stomach, small intestine and colon, this environment favors anaerobes. stomach usually sterile |
| is enterobacteriaceae a group of organisms? | yes |
| describe genitourinary flora | sterile: kidneys, bladder, fallopian tubes. Non-sterile: vagina and distal cm of urethra |
| define virulence | the degree or ability for a microorganism to cause disease (ability to multiply within host) |
| list microorganism virulence factors | capsules, toxins, adhesive fimbriae, and ability to survive intracellularly |
| describe the different ways a host can resist infection | physical barriers, cleaning mechanisms (tears, urine mucous, cilia), low pH, antimicrobial substances (fatty acids on skin, hydrochloric acid in stomach), indigenous microbial flora, phagocytosis, inflammation |
| list the cells involved in phagocytosis | PMNS and macrophages |
| list the steps of phagocytosis | attachment (organism to phagocyte, PMNS have various receptors, opsonization), Ingestion (surrounds attached particles, encloses in phagosome leads to degranulation), killing |
| is phagocytosis effective for intracellular pathogens? | no |
| list the mechanisms for microorganisms to resist phagocytosis | capsules, prevent fusion of phagolysosome, leukocidins, inhibit chemotaxis |
| describe innate immhnity | natural, non-specific (physical barriers, chemical barriers, phagocytosis) |
| describe adaptive immunity | acquired, specific immunity (humoral B lymphocytes, cell mediated by T lymphocytes) |
| describe IgG | 70-75%, crosses placenta |
| describe IgM | 10-15%, first antibody produced, largest |
| describe IgA | 15-20%, secreted by mucous membranes |
| describe IgD | <1%, signals B cell receptors |
| describe IgE | <1%, clearance of parasites and allergies |
| describe the primary antibody response | IgM, peak in 1-3 weeks then decline, gradually changes to IgG or IgA |
| describe the secondary response | rapid increase in IgG, IgM plays a minor role |
| what are the laboratory results associated with infection? | IgM means current or recent infection, IgG means previous infection, an elevated WBC |
| what are the components of the prokaryotic cell? | single celled, no nucleus, nor organelles, much smaller than eurokayocyte, contain a cell wall, may have capsule |
| list and describe the components in a gram positive cell wall | one major layer, peptidoglycan, surface proteins, thick, no outer membrane, narrow periplasmic space, penetrable |
| list the components of gram negative cell wall | two major layers, composed of KPS, lipoprotein, peptidoglycan, porin, proteins, thin, contains outer membrane (unique to gram negative), large periplasmic space, less penetrable to molecules |
| list the components of acid fast cell wall | waxy layer of glycolipids and fatty acids, organisms might show up lightly gram positive |
| describe the components of an absence of cell wall | plasma membrane has sterols, lack of rigid cell wall. common: genera Mycoplasma ureaplasma |
| define pleomorphic | variability in shape |
| what is the function of peptidoglycan? | to prevent osmotic lysis. A polymer that has interlocking chains of two amino sugars (NAG, NAM). |
| what is the function of lipopolysaccharides? | add strength to outer membrane |
| what is the function of surface proteins? | can function as enzymes or adhesions |
| what is the function of the gram negative cell wall? | outer membrane- semipermeable to retain certain enzymes and prevents certain toxic substances from entering |
| what is the function of periplasm? | nutrient breakdown |
| what is the function of teichoic acid | cell wall strength |
| what is the function of a capsule | the outermost layer made of polysaccharides, stick to each other and surfaces, prevents cell from drying out, protection from host immune system. |
| what environmental factors influence bacterial growth rate and what pH pathogenic bacteria grow best at? | pH, temperature, gaseous composition of atmosphere |
| what pH do pathogenic bacteria grow best at? | a neutral pH of 7.0-7.5 |
| define psychrophile | grow best at cold temperatures 10-20C |
| define mesophile | grow best at moderate temp 20-40C |
| define thermophiles | grow best at high temps 50-60C |
| define obligate aerobes | require oxygen |
| define facultative aerobes | survive in the presence of oxygen but do not use oxygen in metabolism |
| define obligate anaerobes | cannot grow in presence of oxygen |
| define facultative anaerobes | can grow with or without oxygen |
| define capnophilic | enriched with extra CO2 (5-10%) |
| define microaerophilic | reduced level of oxygen |
| what is an example of an obligate aerobe? | Pseudomonas aeruginosa |
| what is an example of an obligate anaerobe? | Clostridium spp. |
| what is an example facultative anaerobe? | Escherichia coli |
| what is an example of an Aerotolerant anaerobe? | streptococcus pyogenes |
| what is an example of a microaerophiles? | helicobacter pylori |
| what is an example of capnophile? | Haemophilus influenzae |
| describe the purpose of an anaerobic jar | to remove oxygen to get the anaerobes to grow |
| list the 4 steps in the population growth curve | lag phase, log phase, stationary phase, death phase |
| what is the clinical significance of direct examination in the lab? | make sure that material submitted is representative, identify infectious agents, identify cellular components and debris from inflammation and or infection, help guide physicians for empiric treatment, help develop epidemiologic data |
| what is the purpose of acid fast stain? | differential stain to identify acid fast organisms |
| what is the principle of the acid fast stain? | carbolfuchsin can penetrate the cell wall |
| what is the interpretation of the acid fast stain? | acid fast cells will stain fuschia and non acid fast cells will stain blue |
| what is the purpose of KOH staining procedure? | detect fungal elements in skin, hair, nails and tissue |
| what is the principle of KOH staining procedure? | KOH will break down keratin and skin for easier interpretation |
| what is the purpose of trichrome stain? | detecting intestinal protozoa from stool samples |
| what is the principle of trichrome stain? | permanent stained smear that will stain trophozoites and cysts |
| what is the purpose of calcofluor white? | detecting fungal elements in skin, hair, nails and tissues |
| what is the principle of calcofluor white? | calcofluor white will bind to polysaccharides present in fungus |
| what is the interpretation of calcofluor white stain? | fungus will fluoresce green or blue white |
| what is the purpose of giemsa stain? | staining for malarial parasites in blood smears, inclusion bodies in chlamydia, |
| what is the principle of giemsa stain? | differential stain that contains azure, methylene blue and eosin dyes |
| what is the purpose of acridine orange stain? | used to find bacteria in specimens that may be difficult (early blood cultures) |
| what is the principle of acridine orange stain? | fluorochrome dye that can stain both gram positive and gram negative cell walls. Binds to nucleic acid of cell. Needs fluorescent microscope needed. |
| what are the grading guidelines for sputum? | quantitate on 10x the squamous epithelial cells and WBC. reject sputum sample if there are >25 SEC present and any amount of WBC |
| what is spirillum? | thick spiral |
| what is spirochete? | thin spiral |
| it is not okay to report gram positive diplococci cat eyes | true |