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ch.10-ch13

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Phylogenetics   -Each species retains some characteristics of its ancestor -Grouping organisms according to common properties implies that a group of organisms evolved from a common ancestor .Anatomy .Fossils .rRNA   Morphological characteristics   Useful for identifying eukaryotes  
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Taxonomy   -The science of classifying organisms -Provides universal names for organisms -Provides a reference for identifying organisms   Differential staining   Gram staining, acid-fast staining  
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Prokaryotic species   A population of cells with similar characteristics Culture: Grown in laboratory media Clone: Population of cells derived from a single cell Strain: Genetically different cells within a clone   Biochemical tests   Determines presence of bacterial enzymes  
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Eukaryotic species   A group of closely related organisms that breed among themselves   Serology   -Agglutination occurs in a positive sample -Combine known antiserum plus unknown bacterium  
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Animalia   Multicellular; no cell walls; chemoheterotrophic   Identification   Matching characteristics of an “unknown” organism to lists of known organisms. -Clinical lab identification  
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Plantae   Multicellular; cellulose cell walls; usually photoautotrophic   ELISA Enzyme-linked immunosorbent assay   -Known antibodies -Unknown type of bacterium -Antibodies linked to enzyme  
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Fungi   Chemoheterotrophic; unicellular or multicellular; cell walls of chitin; develop from spores or hyphal fragments   Flow Cytometry   -Uses differences in electrical conductivity between species -Fluorescence of some species -Cells selectively stained with antibody plus fluorescent dye  
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Viral species   Population of viruses with similar characteristics that occupies a particular ecological niche   Nucleic Acid Hybridization   -complete hybridization: Identical -partial hybridization: Related -no hybridization: unrelated  
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Classification   Placing organisms in groups of related species. Lists of characteristics of known organisms.   Domain Bacteria   -Proteobacteria:From the mythical Greek god Proteus, who could assume many shapes  
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The Alphaproteobacteria: Rickettsia -   Rickettsia: Arthropod-borne, spotted fevers -R. rickettsii: Rocky Mountain spotted fever -Rocky Mountain spotted fever is the deadliest tick fever   Alphaproteobacteria: Agrobacterium   Insert a plasmid into plant cells, inducing a tumor  
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The Alphaproteobacteria:Nitrogen-fixing bacteria   -Azospirillum -Rhizobium   The Betaproteobacteria   -Bordetella: B. pertussis -Burkholderia: Cepacia-common in CF patients Cystic fibrosis  
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The Gammaproteobacteria :Pseudomonadales   -Pseudomonas: -Opportunistic pathogens -Metabolically diverse -Polar flagella -Common in CF patients   The Gammaproteobacteria :Legionellales   -Legionairres Disease -L. pneumophilia -30% mortality rate more common in older man  
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The Gammaproteobacteria :Vibrionales   -Vibrio cholerae causes cholera -Still kills a lot in 3rd world countries Through excessive lose of chloride ion   The Epsilonproteobacteria:-Helicobacter -H. pylori   -Helicobacter -H. pylori: Multiple flagella Peptic ulcers Stomach cancer  
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Clostridiales: Clostridium   Endospore-producing Obligate anaerobes   Chlamydias: Chlamydia trachomatis   -Trachoma: common form of blindness -STI, urethritis  
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Yeasts   -Unicellular fungi -Fission yeasts divide symmetrically -Budding yeasts divide asymmetrically   Sexual Reproduction: Three phases   -Plasmogamy: Haploid donor cell nucleus (+) penetrates cytoplasm of recipient cell (–) -Karyogamy: + and – nuclei fuse -Meiosis: Diploid nucleus produces haploid nuclei (sexual spores)  
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Ascomycota   Sac fungi   Fungal Diseases (Mycoses): 5 Mycoses   -Systemic mycoses: Deep within body -Subcutaneous mycoses: Beneath the skin -Cutaneous mycoses: Affect hair, skin, and nails -Superficial mycoses: Localized, e.g., hair shafts -Opportunistic mycoses: Caused by normal microbiota or environmental fungi  
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Lichens   -Mutualistic combination of an alga (or cyanobacterium) and fungus -Alga produces and secretes carbohydrates; fungus provides holdfast   Three Types of Lichens   -Fruticose -Folios -Crustose  
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Rhodophyta   Red algae   Chlorophyta   Green algae  
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Diatoms   -Pectin and silica cell walls -Unicellular -Chlorophyll a and c, carotene, xanthophylls -Store oil -Fossilized diatoms formed oil -Produce domoic acid   Dinoflagellates   -Red Tied -Cellulose in plasma membrane -Unicellular -Chlorophyll a and c, carotene, xanthins -Store starch -Some are symbionts in marine animals -Neurotoxins cause paralytic shellfish poisoning  
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Oomycota   -Water molds -Cellulose cell walls -Multicellular -Chemoheterotrophic -Produce zoospores   Archaezoa   Giardia lamblia: Gastrointestinal infection  
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Amoebozoa   Entamoeba: Ammebic=Dysentory-   Euglenozoa   Trypanosoma spp. -Sleeping sickness:African sleepning sickness and affects the brain -Chagas’ disease: -near the Aztecs -destroys heart  
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The Heartworm Dirofilaria immitis   The heartworm is a type of filaria, a small thread-like worm   Arthropods as Vectors   -May transmit diseases (vectors) Kingdom: Animalia Phylum: Arthropoda (exoskeleton, jointed legs) Class: Insecta (6 legs) Lice, fleas, mosquitoes Class: Arachnida (8 legs) Mites and ticks  
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Arthropods as Vectors   -Mechanical transmission -Biological transmission :Microbe multiplies in vector -Definitive host :Microbe’s sexual reproduction in vector   General Characteristics of Viruses   -Obligatory intracellular parasites -Host range is determined by specific host attachment sites and cellular factors  
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Protista   A catchall kingdom for eukaryotic organisms that do not fit other kingdoms -Grouped into clades based on rRNA   DNA Chip Technology   Red:gene normal cells Green:mutated gene tumor Yellow: in both cells  
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