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Biochem Midterm
Sept 2009 - March 2010
Question | Answer |
---|---|
How many AIDS orphans are there in Africa? | 2 Million |
How many deaths are caused by tuberculosis each year? | 5 Million |
How many deaths are caused by Malaria each year? | 3 Million |
How many deaths are caused by Sleeping Sickness each year? | 400,000 |
What is immunity? | The immune system functions to maintain the integrity of the body |
Small Lymphocyte | Production of antibodies (B Cells) or Cytotoxic and helper functions (T Cells) |
Dendritic Cells | Activation of T cells initiation of adaptive immune responses |
Plasma Cells | Fully differentiated form of B cells that secretes antibodies |
Mast Cell | Expulsion of parasites from body through release of granules containing histamine and other active ingredients |
Natural Killer Cell | Kills cells infected with certain viruses |
Monocyte | Circulating precursor cell to a macrophage |
Neutrophil | Phagocytosis and killing of microorganisms |
Macrophage | Phagocytosis and killing or microorganisms. Activation or T cells and innitiation or immune responses |
Eosinophil | Killing of antibody-coated parasites through release of granule contents |
Megakaryocyte | Platelet formation, wound repair |
Basophil | Controlling immune responses to parasites |
Erythrocyte | Oxygen transport |
Threats from the outside | Bacteria Parasites Viruses Aliens Other human cells |
Threats from within | Tumours Autoimmunity |
Hematopoisis | Formation of blood cells |
Stem cells | (In bone marrow) Rare pluripotent cells capable of self-renewal |
Pluripotent | A pluripotent cell can create all cell types |
Monocytes | Short lived in the blood, differentiate to marcrophages & dendritic cells. Become tissue-fixed. |
Types of Monocytes | Osteoclasts (bones) Glial Cells (brain) Kuppfer Cells (liver) Alverlar macrophages (lung) |
Antigen Presenting Cells (ACP) | Ingest microbes, destroy, digest. Process antigen, present antigen |
APC's present the antigen in the secondary lymphoid organs such as... | Lymph nodes Spleen Adenoids/Tonsils Appendix Peyers Patches |
Type A can receive | Type A and Type O |
Type B can receive | Type B and Type O |
Type O can receive | Type O only (universal donor) |
Type AB can receive | Type A, B and O (universal recipient) |
Our circulation works at? | high pressure |
Fluid leaks from the capillaries into? | Spaces surrounding tissues |
Primary Lymphoid Organs | Bone marrow and Thymus |
Where do all lymphoid cells originate? | Bone Marrow |
Where to T lymphocytes mature? | Thymus |
Act as filters and catch anything that shouldn't be there | Secondary Lymphoid Organs |
Secondary Lymphoid Organs | Lymph Nodes Spleen Peyer's Patches Appendix Tonsils |
Humoral Immunity | Antibodies |
Extracellular Organisms | Bacteria & Viruses/Parasites |
Cell Mediated Immune Response (Natural killer cells, T killer cells, macrophages) | 1. Tumor & 2. Virus infected cells/parasite-infected cells |
Antigen named after it's discovery in the Rhesus monkey, Also found in humans | Rh Factor |
Rh Factor - First Pregnancy (Rh- female, Rh+ male) | No problem |
Rh factor - Second Pregnancy (Rh- female, Rh+ male) | Big problem |
Rh Factor (What happens with the antibodies?) | Antibodies made by mother against erythrocytes of the child, recognize the Rh antigen and lyse the erythrocytes of the next developing fetus |
Blood typing of the parents and administration of the anti-Rh antibodies to remove antigen (red cells) from mother | |
Proteins secreted by stimulated B lymphocytes (plasma cells). Different kinds have different functions | Antibodies (ABS) |
Different kids of antibodies | IgM, IgD, IgG, IgA, IgE |
People with blood type A have __ antigens on the erythrocyte surfaces | A |
People with blood type B have __ antigens on the erythrocyte surfaces | B |
People with blood type AB have __ antigens on the erythrocyte surfaces | Both |
People with blood type O have __ antigens on the erythrocyte surfaces | Neither |
Type A: Tolerant of "A" antigens but have antibodies to "B", Therefore a person of Type A... | Cannot accept blood from type B or AB donor |
We make immune response to arising cancer cells - these are eliminated from the body | Immunosurveillance |
Immunosurveillance First line of defense | Macrophages and Natural Killer (NK) cells |
Immunosurveillance Second line of defense | T Cytotoxic lymphocytes (T killer cells) |
Develop when transformed cells "sneak through" the immune system | Tumors |
Cells of colon cancers and in embryos (CEA) | Carcinoembryonic Antigen |
Liver Cancers (AFP) | Alpha-fetoprotein |
Ca 27-29 | Breast Cancers |
Ca 125 | Ovarian Cancer |
Can be caused by a normal response to a pathogen that has antigens with the same structure as self molecules | Autoimmunity |
Cause rheumatic fever and sometimes damages heart muscle due to anti-strep antibodies | Streptococcal |
Breakdown or tolerance to self molecules | True Autoimmunity |
Autoimmunity results as a consequence of a normal immune response to an infection and the antibodies or cells accidentally react with self molecules | A Misnomer |
10x higher frequency in females than males Antibodies are made to platelets, other cells, histones, DNA Estrogen - Hormonally linked expressions to the disease | Systemic Lupus Erythmatosis (SLE) |
T killer cells attack myelin protein (myelin sheath, insulation to nerves) | Multiple Sclerosis |
- Frequent in females 40-60 years old - Body makes rheumatoid factor, IgM anti-IgG - Complexes deposit in joints causing inflammation. Like having bits of glass in your joints. | Rheumatoid Arthritis |
Surgical procedures developed by 1900. Viennese surgeon observed that he could surgically remove a kidney and put it back into the same animal in a procedure called _________? | Transplantation |
Transplant from one area of a patient to another | Autograft |
Transplant between genetically identical people | Isograft |
Transplant between members of the same species | Allograft |
Transplant between different species | Xenograft |
Working with burn patients in WW2 noticed that autografts were accepted but allografts were not and that a 2nd allograft from the same donor was rejected faster | Peter Medawar |
Humans are composed of dozens of different types of tissues, each composed of discrete units called? | Cells |
About ___ different functional types of cells in humans | 200 |
Two types of Cells | Prokaryote & Eukaryote |
- Complex intracellular structure - Contains organelles (nucleus, mitochondria) | Eukaryote |
Relatively simple cell No nucleus Eg. Bacteria | Prokaryote |
Simple Unicellular organisms may be _______ | Prokaryotic or Eukaryotic |
Complex multicellular organisms may be _____ | Only Eukaryotes |
Estimated total number of cells in human body? | |
Organized, highly condensed (supercoiled) unit of DNA. Usually single copy in bacteria (haploid) | Prokaryotic Nucleoid |
The genome is organized as _______ | Chromosomes |
Human cells contain __ pairs of chromosomes (diploid) | 23 |
These people solved the structure of DNA | James Watson & Francis Crick |
These people prove that genes are composed of DNA (Deoxyribonucleic Acid) | Oswald Avery, Maclyn McCarty and Colin MacLeod |
Each strand or DNA is made of a string of ______ | Nucleotides |
Each _______ is composed of a sugar-phosphate backbone and a Base | Nucleotide |
4 Different Types of Bases In DNA | Guanine, Cytosine, Adenine, Thymine |
2 DNA strands are held together by weak _______ _____ | Hydrogen Bonds |
First Objective of the Human Genome Project | Determine the sequence of the 4 bases in human DNA |
3 Stages of Human Clinical Trials | Stage 1: Is drug safe for humans? Stage 2: Does drug work for it's intended purpose? Stage 3: How does new drug compare with other available treatments? |
Experiment where subjects are not informed of type of treatment they receive | Blind Experiment |
Experiment where neither subject or experimenter is informed of treatment type | Double Blind |
Diverse group of food supplements claimed to have medical benifits | Neutraceuticals |
Based on genomic regions containing Variable Number of Tandem Repeats (VNTR) | DNA Fingerprinting |
Recognition sites for restriction enzymes | Cleavage Sites |
Performed on a rectangular slab of gel composed of aragose, a carbohydrate extracted from kelp | Aragose Gel Electrophoresis |
During Aragose Gel Electrophoresis, DNA molecules always move towards the _______ | Anode + |
All _________ carry complete genome | Somatic Cells |
One of the 2 DNA strands used as template for synthesis of complimentary strand of mRNA | Transcription |
Information on mRNA is decoded into amino acid sequence of a protein on ribosomes | Translation |
Chain of nucleotides sythesized by ___ _______ from template strand of DNA | RNA Polymerase |
Single stranded Ribose instead of deoxyribose Thymine replaced by uracil | mRNA |
Each sequence of 3 bases in RNA | Codon |
A set of 64 three-letter combinations called “codons” used to decode genes into proteins | The Genetic Code |
Two common applications of gene chips | 1. DNA-based diagnostic tests 2. Study of gene expression patterns in cells |
Unique enzyme used to synthesize cDNA from mRNA template | Reverse Transcriptase |
cDNA labeled by using nucleotides tagged with __________? | Fluorescent Dye |
Gene Chip: Colourless means? | Unexpressed genes |
Gene Chip: Coloured spots mean? | Expressed genes |
Microarray analysis: What colour are the genes expressed only in normal cells? | Green |
Microarray analysis: What colour are the genes expressed only in cancer cells? | Red |
Microarray analysis: What colour are the genes unexpressed in normal and cancer cells? | No colour |
Replacing a bad gene with a good one from a normal person to cure problem | Gene Therapy |
Simplest viruses composed of __________ surrounding genome | Protein coats |
Professional cell break-in artists Cell dependent Professional Gene couriers (Leave genes at every crime scene) | Viruses |
Genes usually incorporated into host chromosome at | Very low efficiency |
Used as gene delivery tools | Retroviruses |
Inside living body; Cells genetically modified directly in patient | In Vivo |
Outside living body; Appropriate cells taken from patient, genetically modified, and then returned to patient | Ex Vivo |
First human disease to be successfully treated by gene therapy Single gene defect | Severe Combined ImmunoDeficiency (SCID) |
Cells involved in immunity are derived from? | Bone Marrow Stem Cells |
Detects mutations that cause a disease or may predispose an individual to a disease | DNA Test |
Bonds between DNA strands are broken and separated by heating | Denaturation |
2 DNA strands are cooled and allowed to bond with cooling | Hybridization or Annealing |
Most common fatal genetic disease in north american Caucasians Caused by mutations in single gene | Cystic Fibrosis |
CF mutations are _______ meaning both parents must carry one mutant gene to pass disease to children | Recessive |
Late onset, involves progressive destruction of tissue in nervous system resulting in loss of motor and cognitive function | Huntington's Disease |
HD mutation is ________ meaning only one parent needs to have one copy of the gene | Dominant |
HD gene encodes protein known as? | Huntingtin |
Mutant huntingtin undergoes _______ but normal huntingtin does noe | cleavage |
Areas containing a single base variation in DNA sequence | SNP |
Stages of embryonic development | 1. Sperm fertilizes egg 2. 2-Cell stage 3. 4 cell stage 4. Blastocyst stage |
Genetically altered | Transgenic |
Method for creating genetically altered mice | 1. Modified cloned gene injected into nucleus of fertilized egg 2. Gene spliced into chromosome of embryo at low frequency 3. Resulting "transgenic embryo" implanted into surrogate mother. |
Two common ways to identify function of disease gene in animals | 1. Mutate cloned gene to mimic sequence of human diseased gene 2. Completely destroy gene in genome (gene knockout) |
What are Fibroblasts? | Elongated cells |
____________ are the only cells that can't be grown in a lab | Nervous system cells |
People with __________ lack insulin-producing beta cells of pancreas | Type 1 diabetes |
_______ regulates blood sugar metabolism | Insulin |
Type 1 diabetes is an _____________ where immune system destroys pancreatic beta cells | Autoimmune |
Discovered insulin | Frederick Banting and Charles Best |
Produced purified insulin from cows pancreas | Bertram Collip |
Problems with porcine and bovine insulin? | - Low yields - Hard to purify, contaminants caused allergic reactions |
First genetically engineered medication to be licensed for human use | Recombinant Human Insulin |
A change in the nucleotide sequence of DNA. The 0.1% difference in individuals | Polymorphism |
A region that can have more than one form or sequence | Polymorphic Region |
Occur 1 in every 100-300 bases, mostly in junk with no known effect | SNP's |
Branch of the human genome project. Objective: Assemble a catalog of all human SNP's | International HapMap Project |
Differentiate into different cell types (brain, skin nerve) Diploid | Somatic Cells |
Carry 2 copies of each chromosome | Diploid Cells |
Sperm of Ova Haploid Cells | Germ (Reproductive) Cells |
Carry single copies of each chromosome | Haploid Cells |
Involves dissecting individual intact genes from genome | Cloning Genes |
Protein that carries out a chemical reaction | Enzyme |
A large molecule made up of smaller building blocks (monomers) | Polymer |
Cut DNA at specific sequences of bases, found in bacteria | Restriction Nucleases |
Gene is inserted into a ________ to create recombinant DNA | Vector |
Example of a vector | Plasmid |
A system for naming organisms. First name: Genus, Second: Species. | Binomial Nomenclature |
Genes from different organisms that share similar function | Homologs |
Finding homologs by computer-assisted identification of similar sequences on genomes of different organisms | Comparative Genomics |
Possess human homologs | Model organisms |
99% of mouse and human genes are | homologs |
A _______ is an excellent model organism to study humans | Mouse |
About 60% of genes involved in roughly 300 human diseases also occur in? | Fruit flies |
Easy to grow in lab Unicellular eukatyote | Bakers Yeast |
Fast life cycle: 6 Weeks from germination to seed. Allows one to perform plant genetic experiments quickly | Mustard Weed |
Cannot be cultured in lab | Syphilis |
Polymer composed of monomers called amino acids | Protein |
__ different amino acids occur in proteins | 20 |
Sequence of amino acids determines _____ of protein | Shape |
Shape of Protein, determines it's function | Conformation |
All proteins assume their shapes through process known as? | Folding |
Each sequence of 3 bases is a? | Gene |
There are about ______ genes | 25,000 |
2 Forms of Junk DNA | 1. Duplications 2. Repetitions |
The genetic switches that regulate the expression of genes | Junk DNA |