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Biology Test #4

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Question
Answer
show synthesis of RNA under direction of DNA  
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show carries genetic message from DNA to the protein synthesizing machinery of the cell  
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Translation   show
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Ribosomes   show
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In eukaryotic cells, transcription occurs in the...   show
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primary transcript   show
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show set of 3 nucleotide long words that specify the amino acids for polypeptide chains  
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show DNA strand that provides the pattern, or template, for ordering the sequence of nucleotides in an RNA Transcript  
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Codon   show
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Reading Frame   show
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RNA polymerase   show
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Promoter   show
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show In bacteria, a sequence of nucleotides in DNA that marks the end of a gene and signals RNA polymerase to release the newly made RNA molecule and detatch from the DNA  
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show a region of DNA that is transcribed into an RNA molecule  
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show initiation, elongation, and termination.  
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Transcription initiation complex   show
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TATA box   show
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show modification of RNA transcripts, including splicing out of introns, joining of exons, and alteration of the 5 prime and 3 prime ends  
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5 prime cap   show
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poly-A tail   show
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RNA splicing   show
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introns   show
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show a sequence within a primary transcript that remains in the RNA after RNA processing; also refers to the region of DNA from which this sequence was transcribed.  
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spliceosome   show
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show an RNA molecule that functions as an enzyme, catalyzing reactions during RNA splicing  
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show a type of eukaryotic gene regulation at the RNA-processing level in which different mRNA molecules are produced from the same primary transcript depending on which RNA segments are treated as exons and which as introns  
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domains   show
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show and RNA molecule that functions as an interpreter between nucleic acid and protein language by picking up specific amino acids and recognizing the appropriate codons in the mRNA  
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anticodon   show
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aminoacyl-tRNA synthetases   show
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show flexibility in the base-pairing rules in which the nucleotide at the 5 prime end of a tRNA anticodon can from hydrogen binds with more than on ekind of base in the third position (3 prime end) of a codon  
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Ribosomal RNA (rRNA)   show
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P site (peptidyl site)   show
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A site (aminoacyl site)   show
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show one of a ribosomes three binding sites for tRNA during translation. the E site is the place where discharged tRNA's leave the ribosome.  
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polyribosomes (polysomes)   show
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show a sequence of about 20 amino acids at or near the leading (amino)end of a polypeptide that targets it to the endoplasmic reticulum or other organelles in a eukaryotic cell  
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show a protein-RNA complex that recognizes a signal peptide as it emerges from a ribosome and helps direct the ribosome to the endoplasmic reticulum (ER) by binding to a receptor protein on the ER.  
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show a change in the nucleotide sequence of an organism's DNA, ultimately creating genetic diversity. Mutations can also occur in the DNA or RNA of a virus  
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show a change in a gene at a single nucleotide pair  
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base-pair substitution   show
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show a base-pair substitution that results in a codon that codes for a different amino acid.  
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Nonsense Mutation   show
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Deletion   show
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Insertion   show
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show a mutation occuring when the number of nucleotides inserted or deleted is not a multiple of three, resulting in the improper grouping of the subsequent nucleotides into codons  
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Mutagens   show
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show the reproduction of cells  
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show an ordered sequence of events in the life of a cell, from its origin in the division of a parent cell until its own division into two; the eukaryotic cell cycle is composed of interphase  
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Genome   show
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show a cellular structure carrying genetic material, found in the nucleus of eukaryotic cells. Each chromosome consists of one very long DNA molecule and associated proteins.  
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show any cell in a multicellular organism except a sperm or egg  
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show a haploid reproductive cell, such as an egg or sperm. Gametes unite during sexual reproduction to produce a diploid zygote.  
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Sister Chromatids   show
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show the specialized region of the chromosome where two sister chromatids are most closely attached  
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show the complex of DNA and proteins that makes up a eukaryotic chromosome. When the cell is not dividing, chromatin exists in its dispersed form, as a mass of very long, thin fibers that are not visible with a light microscope.  
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show process nuclear division in eukaryotic cells conventionally divided into 5 stages: prophase, prometaphase, metaphase, anaphase, and telophase. Mitosis conserves chromosome number by allocating replicated chromosomes equally to each of the daughter nuclei  
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Cytokinesis   show
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Meiosis   show
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Mitotic (M) phase   show
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Interphase   show
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G0 Phase   show
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G1 Phase   show
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show the synthesis phase of the cell cycle; the portion of interphase during which DNA is replicated  
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G2 Phase   show
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Prophase   show
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Prometaphase   show
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Metaphase   show
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show the fourth stage of mitosis, in which the chromatids of each chromosome have separated and the daughter chromosomes are moving to the poles of the cell.  
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Telophase   show
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show an assemblage of microtubules and associated proteins that is involved in the movements of chromosomes during mitosis.  
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show structure present in the cytoplasm of animal cells, important during cell division; functions as a microtubule-organizing center. A centrosome has two centrioles  
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Aster   show
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Kinetochore   show
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Metaphase plate   show
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Cleavage   show
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show The first sign of cleavage in an animal cell; a shallow groove in the cell surface near the old metaphase plate  
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show a double membrane across the midline of a dividing plant cell, between which the new cell wall forms during cytokinesis  
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Binary Fission   show
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Origin of replication   show
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show a control point in the cell cycle where stop and go-ahead signals can regulate the cycle  
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Cell Cycle Control System   show
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show a cellular protein that occurs in a cyclically fluctuating concentration and that plays an important role in regulating the cell cycle.  
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show a protein kinase that is active on when attached to a particular cyclin  
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show a protein complex required for a cell to progress from late interphase to mitosis. The active form consists of cyclin and a protein kinase  
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show A protein that must be present in the extracellular environment for the growth and normal development of certain types of cells. A local regulator that acts on nearby cells to stimulate cell proliferation and differentiation.  
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Density-Dependent inhibition   show
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show the requirement that a cell must be attached to a substratum in order to divide.  
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Transformation   show
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show the spread of cancer cells to locations distant from the original site.  
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Describe the flow of genetic information in a cell, from DNA to protein.   show
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show Translation, and transcription Transcription- carries code Translation- translates the code. Transcription takes place in the nucleus Translation takes place in the cytoplasm and Endoplasmic Reticulum  
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show the only difference between the 2 is carbon prime 2. Page 87.  
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What macromolecules make up chromosomes? Which of these stores and encodes the genetic information?   show
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show One of the strands of DNA is flipped directionality, so 5 prime on the top of one strand and 3 prime at the bottom of one strand, would be 3 prime at the top of the other strand and 5 prime on the bottom of the other strand.  
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Describe the backbone of a strand of DNA. Is that backbone charged? If so, what is contributing to its charge, and is the charge positive or negative?   show
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If one strand of a DNA molecule has the sequence 5Õ A T G C T G A A 3Õ, write the sequence of the complementary strand   show
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show A codon is a group of 3 nucleotides (base pairs) that code for an amino acid, or a “stop.” Triplet nature- several different codons can code for one amino acid  
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If I made a mutation in the promoter of a gene, such that ___________ can no longer bind to it, would it still be transcribed? Explain your answer   show
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show Cytosine, Adenine, Uracil, and Guanine  
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show rRNa, tRNA, mRNA rRNA- part of ribosome complex, so ribosome RNA mRNA- is translated into the protein, messenger RNA tRNA- Transfer RNA, transfer amino acids into polypeptides.  
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What happens at the promoter anyway?   show
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show the 3 prime end grows during the elongation phase  
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What is the function of the transcriptional terminator? How is this different than the function of a stop codon?   show
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show mRNA is released from the DNA strand, and then goes through RNA processing which removes the introns from the mRNA, but caps it with a 5 prime cap, and it adds a poly A tail.  
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show No, because it was not part of the DNA. It wasnt transcribed from the original DNA strand, it was added during RNA Processing.  
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show Exons are included, introns are not, they are removed during RNA processing.  
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In a euk cell, where is the DNA stored? a. the cell membrane b. ribosomes c. nucleus d. nucleoid   show
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Which enzyme acts in the mouth to digest polysaccharides?   show
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DNA is a polymer of a. amino acids b. nucleotides c. fatty acids d. monosaccharides   show
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Which bonds hold the 2 DNA strands in a DNA molecule together? a. ionic b. polar covalent c. nonpolar covalent d. hydrogen   show
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show A & T  
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A DNA strand has the sequence ATGCCT- what is its complement? a. TCCGTA b. AGGCAT c. TACGGA d. ATGCCT   show
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show transcription  
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show C#5  
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show 2  
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show 1  
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The promoter is made of a. DNA b. mRNA c. rRNA d. protein   show
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show a poly(A) tail  
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show Transcriptional terminator- its what release the RNA, has anti codon complementary to the stop codon. Stop Codon- The stop codon is what brings in the transcriptional terminator.  
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show A codon is a sequence of 3 nucleotides. All codons don’t code for an amino acid, a stop codon is not an amino acid, but a start codon is an amino acid.  
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show Ribosomes  
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show tRNA- transfer RNA, brings in new amino acids mRNA- message RNA, what comes out of nucleus and codes for what needs to be made rRNA- ribosomal RNA, what makes up ribosomes.  
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show it looks like a clover. the amino acid is attached at the top, and the anti codon is at the bottom, it interacts with mRNA at the bottom, where the anticodon is  
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show mRNA  
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show CAU, which would be histonine  
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show P site- peptidayl site, builds the amino acid, where actual linking occurs. A site- attachment site, where codon and anti codon form a hydrogen bond. E site- exit site, where tRNA leaves.  
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show Start codon, figure 17.17  
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show the tRNA comes in with its amino acid, and transfers it to the polypeptide, hydrolysis is brought in to release the tRNA.  
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show In brings in a release factor, and the release factor breaks apart the ribosome. No, there is no corresponding tRNA.  
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For each of the following protein destinations, group them according to which ÒpathwayÓ (e.g. bound or free ribosomes/ endomembrane/cytoplasm) they will follow in terms of protein localization (so put them together in the proper groupings)   show
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What is a KDEL sequence?   show
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Predict the location of a GFP that has only a SS-   show
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Predict the location of a GFP that has only a KDEL (but no SS)   show
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Predict the location of a GFP that hasboth a SS and a KDEL-bound   show
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Predict the location of a GFP that has a SS and a mutated KDEL-   show
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What part of the tRNA binds to the codon? a. 3Õ end b. anticodon c. promoter   show
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show hydrogen  
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show all of the above  
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Where does RNA polymerase work? a. nucleus b. cytoplasm c. mitochondria d. cell membrane   show
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show mitochondria  
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Which would be secreted out of the cell? a. cytochrome c oxidase b. RNA polymerase c. insulin d. histones   show
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Endomembrane system order is...   show
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proteins are made in...   show
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What kinds of modifications can happen to proteins as they pass through the ER and the Golgi? Would RNA polymerase ever pass through the ER and Golgi? Is RNA polymerase involved in transcription or translation? What does it actually do.   show
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show The organelle that is not working properly is the lysosome. The lysosome is not working because, of a defective phosotransferase , therefore causing the waste to exit the cell, causing a build up of waste material.  
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show signal peptide, the effect of this is it brings it to the ER.  
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What signals that a protein should go to the lysosome? What happens in lysosomes? Why are lysosomes Òideally suitedÓ to carry out their role (why wonÕt lysosomal activity occur in the cytoplasm?)   show
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What happens when a short stretch of amino acids is translated, and that stretch of amino acids contains an ER signal sequence?  What if some of the leucines in that SS were replaced by histidines? What would happen to the localization of that protein?   show
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show directs protein, tells it whether its going to stay in the ER (endoplasmic reticulum)  
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show would be bound. would go all the way through secretion, leave the cell.  
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show Free ribosome, would be in cytoplasm.  
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show bound, would be in ER (endoplasmic reticulum)  
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Predict the location of a GFP that has both a SS and a mutated KDEL   show
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show Mitosis is the reproduction of cells, for things such as skin and hair. The products of mitotic cell are division identical to one another. Compared to the parent cell they have the same genetic material. No, that parent cell doesn’t exist.  
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What are the general steps that a cell needs to carry out in order to completely divide?   show
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show It gets the signal to divide during, G1  
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show G1- is where it decides if its going to divide G0- is where the cell is a continual stage of maintenance.  
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show After replication it looks like an X rater than a single chromatid. Before it was a single strand of a chromatid.  
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centromere-   show
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promoter   show
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terminator   show
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stop codon   show
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show its a protein and DNA, stores hereditary information  
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show protein, regulatory molecules that drive the stages of interphase.  
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show Cyclin dependent kinase (cdk)  
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Describe the levels and activity of both cyclins and cdks at different stages in the cell cycle (in general terms).   show
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show it transfers phosphate groups, from one molecule to another one.  
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If p53 is technically a nuclear protein, is it translated on bound or free ribosomes?   show
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What is Li-Fraunemi syndrome? Why do people with Li-Fraunemi syndrome develop cancer at an early age?   show
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Chromosomes separate during a. mitosis b. G1 c. G2 d. cytokinesis   show
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show G2  
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The centromere is a. where RNA polymerase binds b. one of the two DNA molecules present in a replicated chromosome c. a DNA sequence at the constriction of a chromosome d. the specialized proteins that form the scaffold of the chromosome   show
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Which is an active kinase? a. cdk b. cyclin c. cyclin/cdk d. all of the above   show
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show p53 is stabilized, goes to nucleus, mediates transcription, fix problem  
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ÒFixingÓ the problem a. pause and repair b. die c. what problem? Keep dividing anyway. d. a or b   show
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What would happen to a skin cell that LACKS p53 when its exposed to UV radiation? a.it would arrest until the DNA damage is repaired (good cell) b.it might die and peel off c.it would keep dividing, even in the presence of damaged DNA (cancer cell)   show
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What happens if mutations convert some of the hydrophobic amino acids in an ER SS to hydrophilic or charged amino acids?   show
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Outline the steps that happen that allow a cell to pause, repair DNA &/or die in response to DNA damage. Hint: your answer should include terms like  DNA repair genes, gene expression, p53, DNA damage checkpoint, phosphorylated p53 etc.   show
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Be sure you can find the 5, and 3 carbon of the sugar of a deoxyribonucleotide. What would be different if this were a ribonucleotide? Also be sure you can find the 5Õ end and 3Õ end of a single strand of DNA, and be able to say what you find at each end.   show
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Describe the structure of a DNA helix . What kind of bond is found between two nucleotides along the backbone? What is it formed between?   show
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show Because G and C have 3 hydrogen bonds, compared to A and T which only have 2 hydrogen bonds.  
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What role does helicase play in replication? a.joins Okazaki fragments on lagging strnd b.joins Okazaki fragments on leading str c.provides a 3ÕOH for DNA pol III to add nucleotides d.removes RNA primer e.separates two strands of DNA at replication f   show
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show draw  
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show Its made discontinuously  
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show ligase  
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Is there any RNA primer on the leading strand? Explain your answer. And what is the ÒpointÓ of having an RNA primer anyway? (i.e. why is a primer even needed?)   show
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show half old DNA strand, half new DNA strand.  
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show DNA is added by DNA polymerase 3, and it adds to both leading and lagging strands.  
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show  Its completely replicated, has 2 sets of chromosomes.  
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show compacts them, starts to wrap around histones, and makes it easier to be pulled apart.  
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show Spindle Pole sends out microtubules, which actually pulls apart the chromosomes, grabs at centromere and just pulls apar  
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show structure consists fibers made of microtubules & associated proteins. arrangement of microtubules in interphase are close together,but in mitosis they migrate opposite ends to pull chromosome apart. attach at the centromere and pull apart. figure 12.6  
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We said that a DNA damage checkpoint acts during the cell cycle- review what happens at this checkpoint if DNA damage is present (not just outcomes, but the mechanism that leads to these outcomes).   show
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show Mitosis- is the separation of chromosomes Cytokinesis- splitting of the daughter cells.  
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show Free, it doesn’t have a signal sequence.  
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DNA polymerase III works in the nucleus. Is it made on bound or free ribosomes? Does it have an ER SS?   show
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