| Subcategory | Species | Antibiotic of choice | R/V | Normal flora | Infection |
| MSSA | Staphylococcus Aureus
Catalase +. Coagulase +
Gram Positive
Clusters, Cocci | Oxacillin
Nafcillin
Dicloxacillin | Resistant & virulent
-penicillinase inhibiting the use of Amoxicillin, Ampicillin, Pencillin
-MRSA will carry mecA gene causing it to change the express on of its PBP into PBP2, causing all beta lactams to not work except ceftaroline | skin | n/a |
| CA-MRSA | Staphylococcus Aureus
Catalase +. Coagulase +
Gram Positive
Clusters, Cocci | Vancomycin, Dalbavancin, Daptomycin
Linezolid, Tedizolid
Ceftaroline
Bactrim
CA- Doxycycline. Clindamycin. Minocycline | Resistant & virulent
-penicillinase inhibiting the use of Amoxicillin, Ampicillin, Pencillin
-MRSA will carry mecA gene causing it to change the express on of its PBP into PBP2, causing all beta lactams to not work except ceftaroline | skin | Skin infections, can cause an abscess, purulent cellulits Exotoxin is preCan |
| HA-MRSA | Staphylococcus Aureus
Catalase +. Coagulase +
Gram Positive
Clusters, Cocci | Vancomycin, Dalbavancin, Daptomycin
Linezolid, Tedizolid
Ceftaroline
Bactrim
CA- Doxycycline. Clindamycin. Minocycline | Resistant & virulent
-penicillinase inhibiting the use of Amoxicillin, Ampicillin, Pencillin
-MRSA will carry mecA gene causing it to change the express on of its PBP into PBP2, causing all beta lactams to not work except ceftaroline | skin | infect any anatomical surface, no Exotoxin, generally more Resistant than CAsent |
| MSSE | Staphylococcus Epidermidis
Catalase+, Coagulase –
Gram +. Cocci, cluster | Oxacillin
Nafcillin
Dicloxacillin | Resistant- will produce penicillinase (never use amoxicillin, ampicillin or penicillin)
MRSE- will carry the mecA gene | skin | Generally, not as infective as S. Aureus, however will cause infections in immunocompromised PT, or those with prosthetics can form biofilms |
| MrSE | Staphylococcus Epidermidis
Catalase+, Coagulase –
Gram +. Cocci, cluster | Vancomycin, Telbavancin
Daptomycin
Linezolid, Tedizolid
Ceftaroline
Bactrim | Resistant- will produce penicillinase (never use amoxicillin, ampicillin or penicillin)
MRSE- will carry the mecA gene | skin | Generally, not as infective as S. Aureus, however will cause infections in immunocompromised PT, or those with prosthetics can form biofilms |
| Alpha hemolysis- partial RBC breakdown. Green | Streptococcus Pneumoniae
Gram +
Cocci, pairs/chains | -Ceftriaxone (empirically)
-Vaccine available | Virulent can spread fast, not really resistant, however it is encapsuled by a polysaccharide capsule, most resistant species in the streptococcus family | upper respiratory track | -Bacterial Mengitiis
-Community acquired pneumonia
-Otitis Media
-Sinusitis |
| Alpha hemolysis- green color | Streptococcus viridans
Gram +. Cocci, pairs/chains | Penicillin (DOC) | n/a | upper respiratory track | Dental infections |
| Beta hemolytic, group A | Streptococcus Pyrogens
Cocci, Gram +. Chains/pairs | -Penicillin (DOC)
PANDAS- pediatric autoimmune neuropsychiatric disorders associated with streptococcal infections | Virulent- Jock, some strains will produce toxins which causes tissue necrosis | upper respiratory track, and skin | -Strep throat
-Skin and skin structure infections
-FLESH EATTING SKIN BACTERIA
(Necrotizing fasciitis |
| Beta hemolytic group B | Streptococcus Agalactiae
Cocci, Gram +. Chains/pairs | Only treat during labor | n/a | intestinal track, and the vagina | -Neonatal sepsis
-Neonatal meningitis
-neonatal pneumonia |
| Gamma or alpha hemolytic Group D | Enterococcus
Faecalis
Gram +, cocci, pairs/chains | Treat with ampicillin if resistant treat with vancomycin if resistant treat with linezolid or Daptomycin | Generally, not VRE | GI tract | Nosocomial UTI |
| Gamma or Alpha hemolytic group D | Enterococcus Faecium
Gram +, cocci, pairs/chains | Treat with ampicillin if resistant treat with vancomycin if resistant treat with linezolid or Daptomycin | Can have VRE 85% of the time, so usually linezolid or daptomycin | GI tract | Nosocomial UTI |
| Listeria | Gram +, Bacillus | Patients at risk are newborns, pregnant women, elderly, and immunocompromised | n/a | Not normal flora | can cause gastroenteritis from eating contaminated food, leading to meningitis |
| Clostridium Spp
Anaerobic | Gram +, bacillus | n/a | n/a | n/a | n/a |
| B. Antracis-antrax | Gram +, bacillus | n/a | n/a | n/a | Used for biowarfare |
| B. Serious | Gram +, bacillus | n/a | n/a | n/a | Fried rice syndrome
Can lead to diarrhea and vomiting |
| Escheria coli
(E coli)
Gram (-)
Bacilli Rod | Enterobacteralies family
Lactose fermenters | -Carbapenems with beta lactamase inhibitors | Potential carrier of Extended spectrum beta lactam resistant to penicillin, cephalosporins/ monobactam)
- Resistance to all beta-lactams except the new beta lactam+ extended spectrum beta lactamase inhalators
-May produce carbapenems (CRE) | GI track most common Aerobic gram (-) | UTI
-Food born illness |
| Klebsiella
Gram (-) bacilli rod | Enterobacteralies family
Lactose fermenters | Carbapenems with beta lactamase inhibitors | Potential carrier of Extended spectrum beta lactam resistant to penicillin, cephalosporins/ monobactam)
- Resistance to all beta-lactams except the new beta lactam+ extended spectrum beta lactamase inhalators
-May produce carbapenems (CRE | GI tract | UTI |
| Protues
Gram (-)
Bacilli rod | Enterobacteralies family
Lactose fermenters | n/a | Intrinsic resistance to polymyxins | GI tract | UTI |
| Enterobacter
Serratia
Citrobacter
Providencia
Morganella | Enterobacterales family, ferments lactose | n/a | n/a | n/a | More common in health care associated infections |
| Shigella | Enterobacteralis family | n/a | n/a | Not normal flora | Gastroenteritis |
| Salmonella | Enterobacteralis family | n/a | n/a | Not normal flora | Gastroenteritis
-Typhoid fever |
| -Enterobacter cloacae
-Klebsiella aerogenes
Citrobacter Freundii | Potential producers of AMP-C beta lactamases, making them resistant to all the beta lactamase except for cefepime and carbapenems, De-escalation below cefepime is not recommended, more common in healthcare associated infections | n/a | n/a | n/a | n/a |
| Pseudomonas
Rod (bacillus) | Gram (-) Pseudomonads/ non lactose fermenters | Pencilin- Piperacilin/Tazobacm
Cephalosporin- Ceftazidim, Ceftolozone/avibactam, Cefepime,
Cefiderocol
Carbapenems- Meropenem, Imipenem, Doripenem
Monobactam- Aztreonam
Add on therapy | Virulent and resistant, considered the worst of all the pseudomonads family | Not normal flora found in soil and water | Common cause of nosocomial infections, Pneumonia (HAP/VAP) |
| Acinetobacter
Rod (bacillus) | Gram (-) Pseudomonads/ non lactose fermenters | Colistin | Resistant often resistant to all antibiotics | Not normal flora found in soil and water | Common infections in immunosuppressed, pneumonia, wounds |
| Brukholderia
Rod | Gram (-) Pseudomonads/ non lactose fermenters | Similar to Pseudomonas | Nerds resistant | | Nosocomial infections respiratory |
| Stenotrophomonas
Rod | Gram (-) Pseudomonads/ non lactose fermenters | Bactrim-DOC | Nerds resistant | | Nosocomial infections respiratory |
| Gram negative rod empiric treatment for the critically ill ICU PT | Gram (-) Pseudomonads/ non lactose fermenters | 1st line + anti pseudomonal beta lactam
De-scalation when subspecialties are known
• 1st line narrow spectrum beta lactam,
2nd line- Non beta lactams | | | |
| Neisseria meningitidis
Diplococci
(paired cocci) | Respiratory Gram Negatives and Gram-Negative Cocci | | Virulent- contagious meningitis through respiratory droplets.
Encapsulated | | Meningitis |
| Neisseria gonorrhoeae
Diplococci | Respiratory Gram Negatives and Gram-Negative Cocci | | Virulent- Through direct mucosal contact
Encapsulated | | Gonorrhea |
| Moraxella S.PP
Diplococci | Respiratory Gram Negatives and Gram-Negative Cocci | | | | Upper respiratory tract infections
-Community acquired pneumonia |
| Haemophilus influenzae
Cocco-bacilli | Respiratory Gram Negatives and Gram-Negative Cocci | | Type B encapsuled + virulent | | -URTI
-CAP
-meningitis
-Sepsis in unvaccinated children |
| Bordatella Pertussis
Cocco-bacilli | Respiratory Gram Negatives and Gram-Negative Cocci | | | | Whooping cough |
| Chlamydia Pneumoniae | Atypical Bacteria | -Fluroquinolones
Ciprofloxacin, Levofloxacin, Delafloxacin
-Macrolides
Azithromycin, Clarithromycin
-Tetracyclines
Doxycycline, Minocycline | | They do not grow on normal media or do not stain by gram stain | Community acquired pneumonia (CAP |
| Mycoplasma Pneumonia | Atypical Bacteria | -Fluroquinolones
Ciprofloxacin, Levofloxacin, Delafloxacin
-Macrolides
Azithromycin, Clarithromycin
-Tetracyclines
Doxycycline, Minocycline | | They do not grow on normal media or do not stain by gram stain | Community acquired pneumonia (CAP |
| Legionella Pneumophila | Atypical Bacteria | -Fluroquinolones
Ciprofloxacin, Levofloxacin, Delafloxacin
-Macrolides
Azithromycin, Clarithromycin
-Tetracyclines
Doxycycline, Minocycline | | They do not grow on normal media or do not stain by gram stain | Community acquired pneumonia (CAP |
| Clostridium S.PP
Gram positive bacilli, spore forming, toxin producing | Gram + anaerobes | | virulent | | |
| C. Botulinum
Botulism and botox | Gram + anaerobes | Antitoxin available through CDC | | | correlated to home canned food and honey
Neurotoxin produces paralysis |
| C.Tetani- Tetanus | Gram + anaerobes | | | | -Associated with puncture wounds
-Toxin leads to muscle spasms and hyperreflexia
-Muscles are chronically |
| C. perfringens -Gas gangrene | Gram + anaerobes | | | | -Toxin cause tissue necrosis
-Surgery necessary to stop rapid progression |
| Clostriodies Difficile
(C.Diff) | Gram + anaerobes | -Antibiotic use biggest risk factors
-Clindamycin> Fluroquinoles > 3rd/4th gen cephalosporins
-Oral vancomycin (Not IV)
-Fidaxomicin
-Fecal transplant
-Rebyota
Bezlotoxumab- monoclonal antibody against the toxin, | | | -Active C. Difficile toxin cause intestinal tissue destruction- Leading to diarrhea |
| Bacteroides Fragilis | Gram Negative Anaerobes | -produces Penicillinase
-worst case scenario
-almost always polymicrobial
Treatments
-Metronidazole
-Penicillin+ Beta lactamase inhibitors
Cefoxitin/Cefotetan (TAN/FOX
-Carbapenems+ beta lactamase inhibitor
Tigecycline (Rarely used) | | Most common bacteria in the GI track | -Intra abdominal
-Genital infections
-Wounds |
| Prevotella s.PP | Gram Negative Anaerobes | | Polymicrobial | oral cavity | Oral infections
-trench mouth
-Periodontitis |