Micro_Test1 Word Scramble
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Question | Answer |
Using biochemical markers to ID bacteria | Biotyping (Phenotypic classification) |
Phenotypic Classifications | Biotyping, Serotyping, Susceptibility |
Staph Aureus biotyping shows | Coagulase |
Proteus Mirabilis biotyping shows | Urease |
Detect unique bacterial surface antigens for rapid ID | Serotyping (Phenotypic Classification) |
Interaction of GAS w/Strep pyogenes CW carbohydrate for this dx. Grp A antigen reacts w/specific Ab. | Pharyngitis |
Kirby Bauer Technique: standardized growth medium, bacteria, abx on disks for zone of inhibition | Abx Susceptibility Testing |
Cumulative report of abx susceptibilities | Antibiogram |
MOST precise method of classification | Genotypic |
Utilizes characteristics detected by molecular techniques that show DNA/RNA of virus. Used for rapid results. Example: PCR | Genotypic Classification (MOST precise method ID) |
Size of Bacteria | .2 to 2.0um (.2um is the smallest can see on light microscopy) |
Spherical/Round bacteria | Coccus |
Rod shaped bacteria | Bacillus |
Curved rod shaped bacteria | Vibrio (Spiral) |
Rigid, Spiral-Shaped rod | Spirillum (spiral) |
Flexible, thin spiral-shaped bacteria | Spirochete (spiral) |
SHORT rod bacteria | Coccobacillus |
Variety of shapes in ONE species | Pleomorphic |
Planes of division for diplo | Pair |
Planes of division for strepto | chain |
Planes of division for staphylo | grapelike cluster |
Planes of division for tetrad | packet of 4 cells |
What is the difference between the lipid bilayer in bacteria vs other organisms | NO Sterols in membrane UNLESS Mycoplasma or Ureaplasma(respiratory/urogenital infections) which have NO cell walls. |
Site of cellular respiration and ATP production Regulate Transport Attachment site for chromosome cell-division Protein secretion Synthesis of cell wall components Anchoring Flagella | Cell membrane |
Prevention of cell lysis, semi-rigid & shape maintainer by this | Cell wall |
What is the MAIN structural component of the cell wall | Murein (a peptidoglycan) |
What comprises the backbone of the cell wall | Repeating disaccharides NAG (N-acetylglucosamine) and NAM (N-acetylmuramic acid) |
What links glycan backbones of cell wall | transglycosylation via glucosidases |
What cross-links glycan backbones of cell wall | Transpeptidation via transpeptidase forming tetrapeptides from pentapeptides |
Thick G+ cells will retain what and stain which color? | Retain crystal violet and are blue |
Thin G- cells will retain what and stain which color? | Retain safarnin and are red |
G+ cells have how many layers, how thick? | several layers (25) and 15-80nm thick |
G- cells have how many layers, how thick? | 1-2 layers(few) and 10nm thick |
G+ or G-: Bacillus Anthracis | G+ |
G+ or G-: Staph Aureus | G+ |
G+ or G-: Strep Pyogenes | G+ |
G+ or G-: E Coli | G- |
G+ or G-: Haemophilus influenzae | G- |
G+ or G-: N. Gonrrhea | G- |
Comprised of cell membrane, periplasm and outer membrane | G- cell envelope |
What structures are found in a G- envelope that is NOT found in a G+? | Periplasmic space & outer membrane |
This contains a thin peptidoglycan layer, transport proteins, hydrolytic enzymes and is space btwn cell membrane & outer membrane | Periplasmic space of G- cell envelope |
External to periplasmic space has a functional bilayer (inner identical to PM) and outer composed of LPS | Outer membrane of G- cell envelope |
LPS is at risk when dealing with this organism | G- |
This virulence factor (embedded in outer membrane of G- cell) leads to toxic response. Is ENDOTOXIN of LPS | Lipid A |
Links Lipid A (from G- bacteria) to O Antigen | Branched polysaccharide of LPS |
This highly variable long, linear repeating unit of carbs in LPS is used to identify bacterial strains | O Antigen of LPS |
Systemic Inflammatory Response Syndrome which releases cytokines can be caused by this | LPS (or endotoxin)-must have lysed cell |
Fever, Tachycardia >100bpm, Tachypnea >20 breaths/min, Leukocytosis >12000 or Leukopenia <4000 are signs of this when have 2 or more. | Systemic Inflammatory Response Syndrome caused by LPS/Endotoxin (must have lysed bacteria) |
This can lead to septic shock or MODS | Systemic Inflammatory Response Syndrome caused by LPS/Endotoxin (must have lysed cell) |
In order to release Lipid A (LPS) what MUST happen to cells? | They MUST lyse therefore be careful during bacteria tx to NOT lyse cells |
Porins in G- cell envelope do what? | Control diffusion of small metab like sugar, aa, ions |
Cell membrane & peptidoglycan compose this | G+ cell envelope |
Teichoic/Lipoteichoic acids within peptiodglycans (virulence factors) are only found in these organisms and can initiate endotoxin-like activity | G+ NOT G- cell wall. |
An adhesin found in G+ cell, attaches bacteria to other cells | Wall Teichoic (WTA) |
An adhesin found in G+ cell, anchored to bacterial cell membrane that if shed can release cytokines-->endotoxicity | Lipoteichoic Acids (LTA) |
Penicillins, cephalosporins and Vancomycin all do this | Disrupt cell wall by interrupting synthesis of peptidoglycan (transpeptidation) |
Bacitracin & cycloserine are examples of this | Cell wall targets |
Fill active site of transpeptidase preventing transpeptidation | Beta Lactams |
Degrades glycan backbone, is an innate lytic enzyme (part of innate immune system) and is found in tears, saliva, mucus & lysosomes of WBCs | Lysozyme |
Peptidoglycan cell membrane w/mycolic acid layer (covalently linked to G+) creating a "waxy coat" | Acid-fast bacteria cell envelope |
This waxy coat found on G+ allows cells to resist desiccation, some abx & phagocytosis. | Acid-fast bacterial cell envelope _Composed of Mycolic acid |
Acid-Fast staining identifies this | Mycolic acids present in acid-fast bacterial cell envelope |
Acid-fast stain RED | Carbol stain (primary) which means cell is acid-fast |
Acid-fast stain BLUE | Methylene blue stain (counterstain) which means cell is NON acid-fast |
Mycobacterium TB is an example of this type of bacteria | Acid-Fast bacteria |
What has the THICKEST membrane: G+, G- or acid-fast | Acid-Fast |
Present outside the cell wall comprised of polysaccharide w/glycoproteins. On G+ and G- and is source of K antigen | Glycocalyx _2 Forms: Slime layer & Capsule |
This source of K antigen protects against desiccation, acts as a barrier to toxic hydrophobic molecules (abx), inhibits phagocytosis & promotes adherence to host cells/other bacteria/surfaces by forming a biofilm | Glycocalyx _2 Forms: Slime layer & Capsule |
Strep Pneumo uses this as a virulence factor (is NOT virulent=avirulent if doesn't have) | Glycocalyx _Source of K antigen _2 Forms: Slime layer & Capsule |
This form of wall component is loose, non-uniform, more diffuse and forms a biofilm (on catheters, surface of teeth & mucous membrane of GI tract) | Glycocalyx (Slime layer) |
This form of wall component is rigid, uniform & closely surrounds cell. ID w/Quellung test which forms an Ab/Antigen rxn leading to swelling | Capsule Glycocalyx _Found on Strep, Haemophilus, Klebsiella & Neisseria |
Strep, Haemophilus, Klebsiella & Neisseria all have this in their cell wall | Capsule Glycocalyx _Positive Quellung test |
This external structure is filamentous, provides motility, source of H antigen | Flagella |
One or more arising from one or both ends | Polar Flagella |
Lateral structures over entire surface of cell | Peritrichous Flagella |
Hair like protein structures that promote adherence to bacteria/host cells. Arranged peritrichously | Fimbria |
Attaches to/brings bacterial cells together for DNa transfer | Pilus: _Sex Pilus _F pilus _Conjugation pilus |
70S structure (30S and 50S subunits): ODD numbers | Bacteria |
80S structure (40S and 60S subunits): EVEN | Eukaryotes=EVEN subunits |
Multiple ribosomes + 1 strand mRNA or multiple copies of a single protein | Polysomes |
Abx that target the 70S subunit | Aminoglycosides (streptomycin) Macrolides(erythromycin) |
Area in prokaryotic cell that contains chromosomal DNA+RNA+proteins with NO nuclear membrane | Nucleoid |
Allows for coupled transcription & translation-->faster protein synthesis. | Nucleoid region because lacks nuclear membrane |
Both coupled T&T plus polysomes leading to quick response w/enzymes & structural proteins is good for | Changing environment (O2, temp, pH) |
A dormant "protective stage" (NOT in reproductive stage) that allows a bacteria to survive harsh environment changes (heat, desiccation, disinfectants, acids) by forming a tight membrane around nucleoid | Endospores |
In favorable conditions this dormant form of some bacteria germinates to make a vegetative cell | Endospore |
What are 2 G+ that make spores? | Clostridium AND Bacillus (Anthrax) |
Most bacteria reproduce by this process where one parent divides into 2 daughters. | Binary Fission _Asexual reproduction |
In vitro w/liquid medium good to make | Batch culture of bacteria |
During 4 Phases of Bacteria Growth. Stage where: cells not dividing but are metabolically active | Lag Phase |
During 4 Phases of Bacteria Growth. Stage where: rapid division @constant rate. Generation/Doubling Time ranges from 8min-33hrs depending. | LOG phase (Exponential growth) |
During 4 Phases of Bacteria Growth. Stage where: rate of cells dividing=dying. Number of live cells is constant | Stationary Phase |
This external structure is filamentous, provides motility, source of H antigen | Flagella |
One or more arising from one or both ends | Polar Flagella |
Lateral structures over entire surface of cell | Peritrichous Flagella |
Hair like protein structures that promote adherence to bacteria/host cells. Arranged peritrichously | Fimbria |
Attaches to/brings bacterial cells together for DNa transfer | Pilus: _Sex Pilus _F pilus _Conjugation pilus |
70S structure (30S and 50S subunits): ODD numbers | Bacteria |
80S structure (40S and 60S subunits): EVEN | Eukaryotes=EVEN subunits |
Multiple ribosomes + 1 strand mRNA or multiple copies of a single protein | Polysomes |
Abx that target the 70S subunit | Aminoglycosides (streptomycin) Macrolides(erythromycin) |
Area in prokaryotic cell that contains chromosomal DNA+RNA+proteins with NO nuclear membrane | Nucleoid |
Allows for coupled transcription & translation-->faster protein synthesis. | Nucleoid region because lacks nuclear membrane |
Both coupled T&T plus polysomes leading to quick response w/enzymes & structural proteins is good for | Changing environment (O2, temp, pH) |
A dormant "protective stage" (NOT in reproductive stage) that allows a bacteria to survive harsh environment changes (heat, desiccation, disinfectants, acids) by forming a tight membrane around nucleoid | Endospores |
In favorable conditions this dormant form of some bacteria germinates to make a vegetative cell | Endospore |
What are 2 G+ that make spores? | Clostridium AND Bacillus (Anthrax) |
Most bacteria reproduce by this process where one parent divides into 2 daughters. | Binary Fission _Asexual reproduction |
In vitro w/liquid medium good to make | Batch culture of bacteria |
During 4 Phases of Bacteria Growth. Stage where: cells not dividing but are metabolically active | Lag Phase |
During 4 Phases of Bacteria Growth. Stage where: rapid division @constant rate. Generation/Doubling Time ranges from 8min-33hrs depending. | LOG phase (Exponential growth) |
During 4 Phases of Bacteria Growth. Stage where: rate of cells dividing=dying. Number of live cells is constant | Stationary Phase |
During 4 Phases of Bacteria Growth. Stage where: cells die at log rate & decline of growth conditions because of lack of nutrients, oxygen. See increase in waste products | Decline/death phase |
There is short term/doubling time during this | Acute infections (sudden onset, short course) Can have Short-term treatment |
There is long term doubling during this | Chronic infections(slow progressive onset, indefinite duration) Must have Long-term treatment |
This bacterium has a short generation time (25mins) therefore you should treat it for a relatively short time (10days) | Streptococcus (G+) |
This bacterium has a long generation time (22hrs) therefore you should treat it for a relatively long time (6-12mos) | Mycobacterium TB (Acid-Fast) |
These bacteria grow optimally at pH<5.4 | Acidophiles |
These bacteria grow optimally at pH 5.4-8.5. Is MOST pathogenic bacteria | Neutralophiles |
These bacteria grow optimally at pH >8.5 | Alkaliphiles |
These bacteria grow optimally at 15-20'C | Psychrophiles |
These bacteria grow optimally at 25-40'C. Is MOST pathogenic bacteria | Mesophiles |
These bacteria grow optimally at 50-60'C. Some can tolerate >100'C | Thermophiles |
These organisms are physically & biochemically limited to ONE specific habitat | Obligated pathogens |
These can adapt to specific environmental conditions/can survive under other conditions. MORE than one habitat | Facultative pathogen |
The five groups of bacteria | Obligate Aerobes Obligate Anaerobes Facultative Anaerobes Microaerophiles Aerotolerant Aerobes |
Mycobacterium TB(Acid-Fast) is an example of this type of organism which need oxygen present | Obligate aerobes |
Clostridium(G+) is an example of this type of organism which must live without oxygen | Obligate anaerobe |
E. Coli (G-) is an example of this type of organism which can grow in the presence/absence of oxygen but PREFERS aerobic metabolism. Under anaerobic conditions will ferment. | Facultative Anaerobes |
What are the two products of bacterial fermentation? | Lactic Acid and H2 gas formation |
This byproduct of fermentation causes dental caries. Can happen w/streptococcus mutans (G+) | Lactic Acid Fermentation |
Damage from production of insoluble H2 causes gas to accumulate & rips tissue apart causing a collapse of blood vessels and reducing O2 supply (making the region anaerobes). Caused by fermentation. Give an example of an organism which does this | Clostridium Perfringens (G+) |
Treponema is an example of an organism which grows best in small amts of O2. Many types of this organism are capnophiles (INC CO2 is better for growth) | Microaerophiles |
Capnophile | Increased CO2 is better for growth _Many microaerophiles |
Lactobacillus acidophilus(G+) is an example of an organism which can survive in oxygen but does NOT use oxygen | Aerotolerant Anaerobes _Can survive in esophagus & stomach |
This is dependent on the ability to produce enzymes which breakdown/neutralize O2 & ROS generated by cells. | Oxygen sensitivity |
In order to breakdown O2 and ROS must produce what? | SOD: superoxide dismutase which converts O2 Peroxidase or Catalase: decomposes H2O2 |
Converts oxygen | SOD: Superoxide Dismutase |
Decomposes H2O2 | Peroxidase Catalase |
To treat anaerobe infections would use this | Hyperbaric Oxygen (HBO) Therapy since obligate anaerobes will lack SOD/catalase/peroxidase and therefore will undergo lethal oxidations when exposed to O2 |
How does high osmotic environments (hypertonic soln) effect bacteria | Lethal by causing excess loss of water from cell |
These bacteria are adapted to high salt content. Examples are Vibrio cholerae & S Aureus | Halophiles |
Grow on standard media in lab. Example: Pseudomonas(G-) | Nonfastidious |
Require specific nutrients for survival. Example: N. Gonorrhea(G-), Treponema Pallidum(G-) | Fastidious |
Bacterial DNA has what components? | One Copy of dsDNA, CCC(covalently closed circle), supercoiled. _Haploid organisms |
Are bacteria haploid or diploid? | Haploid |
Extrachromosomal DNA not essential for survival in bacteria. Majority are covalently closed circle (CCC) dsDNA, but can be linear. Codes for beneficial zuxiliary info. Replicates autonomously | Plasmid |
What codes for auxiliary info such as abx resistance, toxins & useful enzymes | Plasmid |
What causes a plasmid to replicate? | Replicates autonomously |
Uptake of naked DNA from lysed cell by acompetent bacteria | Transformation |
This cell receives DNA that encodes for a USEFUL protein after transformation | Recipient cell |
Receiving a beneficial form of a gene post acquistion called | Positive Result |
Receiving a inactive form of a gene post acquistion called | Negative Result |
Receiving a NO change in form of a gene post acquistion called | Null Result |
One way transfer of DNA from one to another w/direct contact of sex or F pilus. Larger pieces of DNA is transferred | Conjugation |
This organism transfers F plasmid from F+/donor to F-/Recipient using conjugation | E. Coli (G-) |
This is transferred as ssDNA & replicates in D & R cells | F Plasmid |
This joins cells NOT for DNA transfer | Conjugation Pilus |
Which pili are involved in conjugation: F pilus, Sex pilus, conjugation pilus | F Pilus AND Sex Pilus NOT conjugation pilus |
Transfer of bacterial chromosomal DNA using a bacteriophage(virus which infects bacteria) | Transduction |
Virulent phage replicates within bacterial host & fragmented bacterial DNA packaged into capsid of newly formed phage. A defective phage able to transduct will infect the bacterial cell injecting bacterial DNA which will recombine with the genome. | Example of virulent phage w/generalized transduction & lytic cycle. _Transduction will cause the cell to burst and release many copies(lytic) |
Temperate phage injects viral DNA & lysogenic conversion occurs(viral DNA inserts into bacterial chrom) & phage-->Prophage. If viral DNA carries a virulence factor then bacteria converted to a pathogenic microbe | Temperate phage with specialized transduction and lysogenic cycle |
Viral DNA insertion into bacterial chromosome | Lysogeny (occurs during lysogenic conversion) |
Prophage | What a phage becomes after lysogeny (viral DNA insertion) occurs |
Corynebacterium Diphtheria has virally encoded diphtheria toxin. Would be an example of this type of transduction | Specialized transduction: Lysogenic conversion where viral DNA carries virulence factor-->pathogenesis |
Strep Pyo has virally encoded scarlet fever toxin. Would be an example of this type of transduction | Specialized transduction: Lysogenic conversion where viral DNA carries virulence factor-->pathogenesis |
Vibrio Cholera(G-)has virally encoded cholera toxin. Would be an example of this | Specialized transduction: Lysogenic conversion where viral DNA carries virulence factor-->pathogenesis |
Mobile genetic element responsible for most genetic variability in bacterial populations & spread of abx resistance genes | Transposons |
Microbes found at certain sites in healthy individuals in complete absence of disease | Normal flora |
Makeup of microbial populations dependent on | Physiology, age, habitat, diet |
Occupy site in/on body & prevent colonization by pathogens | Beneficial microbes |
Induce cross-reacting ab's & stimulate immune response | Beneficial microbes _E Coli ab will react w/H influenzae type B |
Synthesize Vitamins K & B complex & compete with pathogens for limiting nutrients. Make substances which inhibit/kill microbes(bacteriocins, lactic acid) | Beneficial microbes |
Response to local phys/environ factors which impose selection for or against specific flora. | Tissue tropism |
1)Specialized habitats provide certain growth factors 2)Microbes attach to specific receptor sites on tissues | Tissue tropism _Impose selection for certain flora |
Lipids in sebaceous glands and nutrient substrates in GI tract help do what | Provide specialized habitats which provide certain growth factors |
Tooth enamel w/slime layer and microvilli in small intestine w/fimbriae do this | Allow microbes to attach to specific receptor sites on tissues |
Strep Salivarius on tongue example of this | Tissue tropism |
E Coli on Epithelium of small intestine epithelium example of this | Tissue tropism |
Staph Aureus on nasal membranes example of this | Tissue tropism |
Staph epidermidis on skin example of this | Tissue tropism |
Variation in composition/numbers from birth to old age of flora in oral cavity, vagina, large intestine, skin | Ecological succession of bacteria |
Resident flora | Always present @characteristic sites |
Transient flor | Establish then are eliminated through competition w/other microbes. Host factors impt. |
Resident & transient flora impt for this | Homeostasis |
Normal flora create disease when inoculated into sterile site. Example includes endocarditis & UTI | Displaced organisms |
Oral bacteria into bloodstream | Endocarditis _Displaced organism |
Intestinal bacteria into urinary tract | UTI _Displaced organism |
Oral thrush & vulvovaginal candidiasis can be caused by this occuring w/candida albicans(G-) | Overgrowth of a species due to prolonged use of broad spectrum abx |
Pseudomembranous colitis by Clostridium Difficile(G+,Bacillus,Obligate Anaerobe) can be caused by this | Overgrowth of a species due to prolonged use of broad spectrum abx |
Quinolones and beta lactams can cause this with prolonged use | overgrowth of species such as candida albicans & c difficile leading to thrush, candidiasis, pseudomembranous colitis |
Secreted enzyme which starts biochem rxns in plasma by converting fibrinogen to fibrin. Forms clots by blocking WBC access to bacteria & preventing phagocytosis | Coagulase |
Staph Aureus (G+) is positive or negative for coagulase | Coagulase Positive |
S epidermidis is positive or negative for coagulase | Coagulase Negative: CNS-CoNS |
S Saprophyticus | Coagulase Negative: CNS-CoNS |
Toxin which lyses rbc membrane. Detect with isolation streak of bacteria on BAP. Used to differentiate Streptococci | Hemolysin |
Complete streptococci infection will show this w/Hemolysin | =Beta White colony & clear halo |
Partial streptococci infection will show this w/Hemolysin | =Alpha Gray/green colony & partial halo |
No streptococci infection will show this w/Hemolysin | =Gamma White colony & NO halo |
S. pyogenes & S agalactiae show white colony & clear halo. Type of strep? | Beta |
S. mutans shows gray/green colony & partial halo. Type of strep? | Alpha |
Enterococcus faecalis if put on a hemolysin test would show this | White colony with no halo |
Fatty acid (sebaceous glands) & salt(sweat glands) do what to most bacteria/molds | Inhibit growth |
Where are microbes more present? | Moist areas _axilla, perineum, head _intertriginous areas |
On dry skin what type of organism predominates | G+ _S epidermidis(CNS, facultative anaerobe/halophile) _Propionbacterium acnes(anaerobic, pleomorphic) _Diphtheroids:Corynebacterium(facultative anaerobic bacilli) |
Responsible for acne, present on dry skin | Propionibacterium acnes |
Must grow on mannitol salt agar, present on dry skin | Staph epidermidis |
What's present on moist skin | Normal dry skin G+ and G- like E. coli and Acinetobacter |
Motile facultative anaerobe with O, H, K antigens. Must grow on MacConkey's agar to isolate enteric bacteria. Present on moist skin | E Coli |
Unlike E coli, also G- present on moist skin, this bacteria is NOT motile & is obligate aerobic | Acinetobacter |
Staph Aureus | Gram Positive |
E Coli | Gram Negative |
Fungi and parasites | Eukaryotes |
Established microbe w/NO interference w/normal body function | Colonization |
Established microbe that INVADES host tissues & multiplies. May or not manifest disease | Infection |
Abnormal condition of body that occurs when interaction leads to pathogenesis & damage to host | Disease |
Any objective evidence of disease noted by an observer (changes caused by disease, seen by provider) | Signs |
Any subjective evidence of disease noted by an observer (changes caused by disease, felt by patient) | Symptoms |
Indicator of disease, sensed and observed. Both a sign and symptom | Fever |
Generalized Aches and Pains | Damaged tissue releases mediators stimulating pain receptors in joints & mm |
Localized Pain | Pathogen or wbc release mediators which stimulate pain receptors |
Yeast | Unicellular |
Molds | Multicellular |
Headache | Blood vessels in brain dilate as result of mediators released by damaged tissue |
Fever | Endogenous & exogenous pyrogenes released which effect hypothalamus |
Sore Throat | Pathogens & WBC release inflammatory cytokines cause swollen pharynx lymphatic tissue |
Nausea | Ingested toxins stimulate neural center |
Opportunistic Pathogens | Part of normal flora that establish disease when move to UNprotected site _Staph Aureus(G+) _E Coli(G-) _Candida Albicans(Acid Fast) _C Difficile (G+) |
Anterior nares/nostrils & perianal region. Coagulase + cocci. Ferment mannitol | S. Aureus(G+) |
Around perineum & thighs of DM. Obligate anaerobe bacilli that forms endospores. Associated w/gas gangrene & food borne disease | Clostridium Perfringens(G+) |
Bifidobacterium | Bifurcated bacteria _G+ |
In Eye, microbes from skin | S epidermidis(G+)-CoNS S Aureus(G+)-rare, catalase-positive |
In Eye, microbes from nasopharynx | Strep Pneumo(G+): alpha hemolytic, lancet shaped diplococci Neisseria(G-) Nonmotile, Aerobe Moraxella Catarrhalis(G-) Nonmotile, Aerobe |
Strep Pneumo(G+) | alpha hemolytic, lancet shaped diplococci |
Predominant flora in mouth | G+ cocci Alpha hemolytic viridans streptococci _S mutans |
Responsible for dental caries & plaque. Deposit polymers of glucose(glucans) & forms biofilms. Lowers pH by fermentation & demineralizes enamel(caries) | S mutans(G+) |
Can seed bacteria into bloodstream causing endocarditis | S mutans(G+) |
Found in the mouth, a yeast which causes oral thrush & dental stomatitis. G+ w/no peptidoglycan | Candida Albicans (Acid-Fast) |
Upper respiratory tract | nares, sinus, nasopharynx, oropharynx, larynx |
Lower respiratory tract | trachea, bronchi, bronchioles, alveoli |
Primary carriage site for S. Aureus(G+) in 30% of pop | Nares(nostrils) |
Healthy sinuses | Sterile _Mucociliary escalator |
Predominant flora in naso & oro pharynx. | G+ Cocci 4 alpha hemolytic viridans Strep _Strep pneumo |
Potentially pathogenic, found in naso & oropharynx. G+ | Strep Pneumo |
Gram Negative Diplococci found in upper respiratory tract | Moraxella Catarrhalis N. Meningitidis |
Gram Negative Bacilli(rods) found in upper respiratory tract | E coli Klebsiella Proteus |
Motile, encapsulated(mucoid colony) found in upper respiratory tract | Klebsiella (G-) |
Highly motile (swarms on agar plate) found in upper respiratory tract | Proteus (G-) |
Gram - Pleomorph found in upper respiratory tract | H Influenzae (Pleomorph) _Nonmotile _Fastidious _Encapsulated |
Normal flora continues to level of where in upper respiratory tract | Larynx |
Virtually free of microbes(cleansing action of ciliated epithelium). Any microbes/bacteria reaching here swept out (mucociliary blanket). | Lower Respiratory Tract: trachea, bronchi, bronchioles, alveoli |
PCR | Rapid method for identifying & culturing bacteria that cannot otherwise be grown |
Mucociliary escalator | Action mucociliary blanket which removes bacteria by cough, sneeze etc (move outward) |
What controls the # and population of bacteria in the GI | Acidic pH and bile |
Few to no normal flora in this section of GI tract | Esophagus & stomach _Must be acid tolerant to live here |
Stomach flora | Lactobacillus(G+) Helicobacter Pylori(G-): motile vibrio |
Urease producer(localized pH INC) responsible for gastric ulcers. | Helicobacter Pylori(G-): motile vibrio |
Duodenum & jejunum flora | Lactobacillus(G+) Enterococcus Faecalis(G+): Group D streptococcus. Alpha, beta, gamma hemolysis |
Ileum flora | Pop & diversity increase. Similar to colon(bacteriodes-G- and Bifidobacterium-G+) |
Colon flora are numerous & complex. 500-1000 taxa. Anaerobes predominate! | Bacteriodes_encapsulated bacilli, obligate anaerobes Bifidobacterium_pleomorph obligate anaerobe |
What predominates in the colon? | Anaerobes |
Encapsulated bacilli, obligate anaerobe found in colon | Bacteriodes(G-) _Higher in meat-lovers compared to vegans |
Pleomorph, obligate anaerobe found in colon | Bifidobacterium(G+) _>90% total bacteria |
What controls species composition & numbers in colon? | Diet |
Undergoes eco succession from birth through life | Vagina |
During child-bearing years this is the predominant microbe. Metabolizes glycogen, produced by vaginal epithelium, induced by estrogen production | Lactobacillus Acidophilus(G+) _Low pH-Lactic Acid production _Prevents establishment of other bacteria |
Clue cells | Bacterial vaginosis |
Potentially pathogenic vaginal bacteria | Candida Albicans(Acid-Fast) |
Responsible for neonatal meningitis. 1/4 women have this beta-hemolytic. Found in vagina | Streptococcus Agalactiae OR Group B Strep |
Normal flora in urinary tract(similar to skin) | Staph Epidermidis(G+) Diphtheroids(G+) Enteric Bacteria: E Coli(G-) & Proteus(G-) |
Micturition(urination) | Limits/prevents colonization of urethra. Microbes flushed from urethra. |
Bladder urine | Normally sterile because of midstream catch |
Midstream catch | Reduces normal flora contamination in urethra |
Microbes isolated from where represent infection w/potential for disease | Bodily fluids, tissues, upper urinary tract |
Normal flora in kidneys & bladder | There are NO normal flora here |
Patient subject to trauma, with defective immune system or preexisting condition. More susceptible to opportunistic microbe. | Opportunistic Pathogens _Pseudomonas A _Nocardia Asteroides |
Skin of burn victim or lungs of CF patient | Pseudomonas A opportunistic pathogen |
Respiratory infection in immunosuppressed or immunocompromised | Nocardia asteroides opportunistic pathogen |
Always associated w/disease. Signs & Sx caused by damage to or loss of tissues/organs. Host inflammatory response. | Mycobacterium TB(Acid-Fast) N. Gonorrhea(G-) |
Acid, gases, byproducts of metabolism formed during growth | Tissue damaging metabolites _Strep mutans(lactic acid-->dental caries) |
Proteins, enzymes act locally to damage host cells. Affect tissue matrices & intracellular spaces. Help spread & growth of pathogen. Damages to host cell can be pathologic | Invasins or "Spreading factors" _Hyaluronidase _Collagenase _Neuraminidase _Streptokinase & Staphylokinase |
Attacks interstitial cement of connective tissue. Depolymerizes hyaluronic acid | Hyaluronidase _Invasin/Spreading Factor |
Breaks down collagen, framework of mm | Collagenase _Invasin/Spreading Factor |
Degrades neuraminic acid(sialic) which is intercellular cement | Neuraminidase _Invasin/Spreading Factor |
Activate plasminogen. Breakdown blood clots. | Fibrinolysins: Streptokinase & Staphylokinase _Invasin/Spreading Factor |
Binds to receptors on host cells/tissues and binds to carbohydrate moieties-glycoproteins | Adhesins _Vibrio Cholerae(G-) _E coli(G-) |
Capsule w/slime layers and biofilms which comprised of this. Helps w/adhesins | Glycocalyx |
Lead to colonization of inert & organic materials. Becomes continual or intermittent infection source. | Biofilms _Strep mutans _Staph Epidermidis |
Forms biofilms on IV catheters. Skin flora | Staph Epidermidis |
Forms glucan & binds to tooth enamel. Secretes glucosyltransferase | Strep Mutans |
Attach to specific host molecules for "tissue tropism" part of adhesin mechanism | Fimbriae/Pili _N Gonorrhea(G-) |
Attaches to conjunctiva | N Gonorrhea(g-) with its pili |
NOT fimbriae/pili are proteins associated w/cell ENVELOPE(wall/membrane) mediate binding specificity. Part of adhesins | Afimbrial adhesins _Staph Aureus (G+) _Strep Pyogenes (G+) _Can lead to endocarditis/pharyngitis |
Look like enzymes, heat labile, high activity & specificity | Toxins |
Toxic to cells, usually by direct action. Secreted into ECF or associated w/bacterial cell surface. Have components which bind host receptors. Can be both G+ and G- | Exotoxins |
Toxic to cells, usually by direct action. Secreted into ECF or associated w/bacterial cell surface. Have components which bind host receptors. Can be both G+ and G-. Causes GI Sx (vomit, diarrhea, nausea) | Enterotoxins _Shigella dysenteriea(G-) _Staph aureus(G+) |
Bloody diarrhea & abdominal cramping w/this G- enterotoxin | Shigella dysenteriae |
Vomiting and diarrhea with this G+ enterotoxin | Staph aureus |
Enzymatic component of A-B Exotoxin | A Subunit: Attack Cell |
Binding subunit of A-B Exotoxin. Binds toxin to host cell Receptor | B Subunit: Binds toxin to cells |
After binding (B subunit), attacking enzyme(A subunit) enters | A-B Exotoxins _Diphtheria _Shigella dysenteriae _C botulinum _C tetani |
Causes flaccid paralysis | C botulinum (lysogenic conversion) |
Causes spastic paralysis | C tetani |
Lysogenic conversion | Virus=Bacteriophage |
Plasmid | Extrachromosomal DNA |
Immunogenic & deadly at extremely low concentrations | Functional exotoxin |
Denatured toxins, still immunogenic, in vaccines | Toxoids _Diphtheria toxoid vaccine _Teatnus toxoid vaccine |
Attack host cell membrane | Membrane-active Exotoxins _Proteases(Pseudomonas) & Lipasis(C Perfringens) & Hemolysis(Strep Pyogenes) |
Toxins which activate 1/5 T cells in absence of antigen(usually normal 1/10000) causing release of LARGE amt of cytokines. Possible life-threatening response & T cell death | Superantigens _Staph Aureus in Toxic Shock Syndrome _Strep Pyo in pyrogenic exotoxin A-SpeA |
Toxic Shock syndrom toxin(TSST-1) | Staph Aureus _Superantigen |
LPS of gram negative bacteria. Toxicity in lipid component(Lipid A). Immunogenicity is in the polysaccharide part | Endotoxin |
Remains associated w/cell wall until cell disintegrates by autolysis, lysozymes or phagocytosis. Causes inflammation, activates complement. Leads to fever, HTN, shock & possible death | LPS _Endotoxin |
Extracellular, diffusible. Denatured by boiling. Forms toxoid. High potency. High specificity. Often enzymatic activity. | Exotoxin |
LPS, part of outer membrane, cannot dentaure by boiling, does NOT form toxoid, low potency, low specificity, no enzymatic activity. Pyrogenic | Endotoxin |
Spread from primary site of infection(toxins & antigenic molecules). Cytotoxic effects remote from focus of infections. | Circulation via blood & lymph _Staph Aureus |
Exfoliative toxin (desquamation of upper epidermis). Focus on the conjunctiva. | Staph Aureus causing Scalded Skin Syndrome |
With poorly antigenic polysaccharide, deters phagocytosis & protects against degradation in phagolysosome. (Strep Pneumo) | Evasion of immune response via Encapsulation |
Intracellular growth & escape detection (Mycobacterium TB) | Evasion of immune response via Intracellular growth |
Chelate available iron & transport into cell. Scavenge from host iron-binding proteins Lactoferrin & transferrin | Siderophores _Iron Capture by Microbes |
Body's immune response to infection can result in signs & sx of disease | Antibacterial immunopathogenesis |
Bacteria can induce tissue damaging immune responses | Treponema Pallidum-Syphilis _Organ & nerve destruction. Induced by binding of WBC to endothelium |
Cross-reacting antibacterial antibodies | Strep Pyogenes _Rheumatic Fever, sequela to infection. _Ab's to cell wall M protein. Cross-react w/& damage to heart valves & mm. |
Stage 1 of Disease | Incubation _Pathogen has entered thru "Portal of Entry" via entry/shedding |
Stage 2 of Disease | Prodromal |
Stage 3 of Disease | Acute |
Stage 4 of Disease | Decline |
Stage 5 of Disease | Covalescent |
NO signs/sx. Innate immune system NOT activated. Must be an INFECTIOUS dose/INOCULUM to gain entry, start growth. NOT infectious. | Stage 1 of Disease: Incubation _Preclinical |
Number of microbes needed for disease | Inoculum _Shigella 200 CFU _Vibrio Cholerae 1e8 CFU |
(# colonies) x (Dilution Factor) | CFU |
Appearance of signs/sx in "illness." Pathogens generate early signs/sx (nonspecific). Activation of the innate immune system.Numbers have INC since incubation stage. Easily transmitted even before host realizes has bug. | Stage 2 of Disease: Prodromal _Warning |
Acute stage most severe during this time. Characteristic for the dz, signs & sx. Balance btwn host immune system & pathogen virulence tipped to recovery or death. Acquired-immune system active. Pathogen numbers are stationary(inc or dec). | Stage 3 of Disease: Acute _Clinical Illness |
Acquired-immune system active & can easily transmit | Stage 3 of Disease: Acute _Clinical Illness |
Rapid developing signs & sx w/peak in intensity. Recede as pt moves to Decline stage | Acute stage in acute disease |
Signs and sx persist for an intermediate-->indeterminate period of time, slow move to Decline stage | Acute stage in chronic disease |
Illness is still apparent but signs/sx dwindle. Immune activity is decreased. Ab's have been formed. Communicable if individual becomes Carrier | Stage 4 of Disease: Decline Stage _Typhoid Fever: Salmonella Typhi |
Pt is now returning to full health. Signs & sx ending. No activity twd pathogen & pathogen is cleared from host. Not communicable since NO presence of pathogen | Convalescent Stage |
Chem substance w/ability to inhibit growth or kill BACTERIAL cell | Abx |
Can you use abx on bacterial or viruses? | Bacteria |
Inhibits growth of target organisms | Bacteriostatic _Do NOT use w/immunocompromised pt's or for infections in privileged sites |
Effective against a limited array of microorganisms | Narrow-spectrum abx |
Effective against a wider array of microorganisms | Broad spectrum abx |
More harmful to the bacterial cell than to the host cell. Often, differences btwn eukaryotes & prokaryotes are exploited. | Selective Toxicity _Cell wall inhibitors, 70s protein synthesis inhibitors |
beta lactams, abx, vancomycin, cycloserine, bacitracin | Inhibit peptidoglycan synthesis _Cell wall inhibitor |
Penicillin + Penicillin analog(Clavulinic acid) | Extend spectrum of activity |
1st generation cephalosporins | G+ cocci, G- enterics |
2nd generation cephalosporins | Extended Spectrum: more G-, less G+ than previous gen |
3rd generation cephalosporins | Broad Spectrum: more G- (inc resistance to beta-lactamase) some can cross BBB |
4th generation cephalosporins | Extended spectrum to P aeruginosa & some G+. Use in meningitis cases _INC resistance to beta-lactamase |
Act as cationic detergents by disrupting lipid bilayer of G- cell walls. Toxic to host, used externally | Polymyxins |
Aminoglycoside | Protein synthesis inhibitor _bactericidal |
Tetracycline | Protein synthesis inhibitor _bacteriostatic |
Chloramphenicol | 50S unite inhibitor _LIMITED use bc causes aplastic anemia _bacteriostatic |
Macrolides | 50S unite inhibitor _bacteriostatic |
Can cause aplastic anemia | Chloramphenicol |
Intereferes w/DNA or RNA synthesis | Rifampin & Fluoroquinolones |
Inhibits DNA-DEPENDENT RNA polymerase(transcription) | Rifampin _bactericidal |
Inhibits DNA GYRASE activity | Fluoroquinolones _bactericidal |
Analogs of PABA that interfere w/folic acid synthesis by competing for dihydropteroate synthase. Often given w/TMP-SXT | Sulfa drugs(Sulfonamides) _Bacteriostatic _Broad Spectrum |
Analog of pteridine portion of dihydrofolic acid that interfere w/folic acid synthesis by inhibiting DHF reductase. Often given w/TMP-SXT | Trimethoprim _Bacteriostatic |
Why does a bacteria need folic acid? | Essential for nucleic acid synthesis |
Random mutations in DNA that allow resistance to occur | Chromosomal resistance |
Transfer of gene/plasmids that allow resistance | Acquisition of chromosomal or extrachromosomal DNA |
Referred to as RTFs or R Factors | Resistance Factors where genes can be found on the plasmid conferring resistance: _Chromosomal _Acquisition of chromosomal/extrachromosomal DNA |
Alteration of drug targets (like ribosomal mutation) would cause what? | Resistance _ex: Resistance to erythromycin & rifamycin |
Alteration of PM permeability and/or INC drug transport would cause what? | Resistance |
Synthesis of enzymes that inactivate abx would cause what? | Resistance |
Alteration of a metabolic pathway would cause what? | Resistance |
Resistance to erythromycin & rifamycin occured thru this mechanism | Alteration of drug target by changing the bacterial ribosome |
Resistance to erythromycin & tetracycline occured thru this mechanism | Alteration of PM permeability and/or INC drug transport |
Resistance to beta lactams, chloramphenicol, aminoglycosides, tetracycline occured thru this mechanism | Synthesis of enzymes that inactivate abx |
Resistance to sulfonamides, trimethroprim occured thru this mechanism | Alteration of a metabolic pathway |
Enterococcus faecalis, Mycobacterium TB, Pseudomonas can have clinical variations which are this | Resistant to ALL |
Abx use in animals, social factors, innapropiate pt use, collateral damage & not washing hands | Factors contributing to resistance |
How do animals contribute to abx resistance? | They consume/excrete abx Can transmit resistant bacteria in food Genetic transfer to human specific organisms |
How do social factors fuel resistance? | Poverty encourages devo of resistance thru under-use of drugs. Resistance is emerging from overuse of drugs in wealthy countries. Globalization, INC travel & trade ensure that resistant strains quickly move elsewhere. |
How many unneccessary Rx are used in the US? | 60million/150million. _For viral sinusitis |
Factor that helps resistance in GI? | Abx disrupt normal flora |
Why may abx fail when NOT caused resistance | Not able to reach microorganisms: cannot cross BBB Be too toxic at doses required to be effective against targeted microorganisms |
All these organisms are OBLIGATE INTRACELLULAR PARASITES | Viruses _ONLY reproduce in living cells _NO independent metabolism! |
Viruses are filterable agents, what does this mean? | Passage through fine pore filters is possible (viruses are small in size) |
Replicate in a pattern that is fundamentally difft from ALL other living cellular organisms. Progeny made in assembly line fashion. | Viruses |
Are viruses made through binary fission or in assembly line fashion? | Assembly line fashion |
Central goal of ALL viruses | Rapidly replicate new virions at expense of host cell. _Could lead to lysis/cell death though non-lethal strategies may also be used |
Virus remains assoc w/host but genes are largely UNexpressed. Does NOT cause death to host but lies dormant | Prophage(bacterial lysogens) or provirus _Stable & long-term but can be terminated by environment |
Infection without cell death; unusual virus-host interaction in which virus is found in a long-term association w/the host | Persistent Infection |
Intermittent acute episodes of a virus production btwn which there's almost a total absence of virus particles & very limited viral macromolecular synthesis. | Latent Infections _Herpes Simplex |
Nonlytic production of virus, continued presence of substantial #'s of virus particles during periods in which clinical dz absent | Hepatitis B virus |
Infected host cells are "immortalized" and properties altered (transformed) to those of cancer cells | Transforming Infections _HPV |
Inflammation of stomach/intestine. Frequent children mortality in devo nations | Gastroenteritis |
Nausea, diarrhea, vomiting, cramps, malaise, anorexia, myalgia, headache. ACUTE WATERY DIARRHEA. | Viral gastroenteritis |
Incubation period for replication of virus in small intestine epithelial cells | 15-48hrs _Disease:3-5days_may be shed at low levels for days-->wks post-illness |
Viral gastroenteritis dx via this: | Antigen detection by Rotazyme(enzyme immunoassay) or latex agglutination test |
Tx for viral gastroenteritis | Primary=Oral Re-hydration NO abx!!!! |
2 main settings for viral gastroenteritis | Infant diarrhea & food outbreaks(fecally contaminated) |
Rotavirus & enteric adenovirus are examples of viruses active in this main setting | Infant diarrhea _In locations where clean water/food even |
Prevention of viral gastroenteritis | Vaccines available for Rotavirus(Rotateq/Rotarix) but immunity is short lived. NO primary prevention means. |
Rotavirus | Endemic SEVERE DIARRHEA of infants _infect small intestine villi enterocytes disrupting osmotic function _5-7day course of fever/vomit |
Winter vomiting disease_occur every winter | Rotavirus: infant severe diarrhea |
Which rotavirus vaccine has been recalled bc of links to intussception | Rotasheild |
Rotavirus vaccines STILL available | Rotateq Rotarix |
dsDNA virus in endemic diarrhea of infants. Lasts LONGER than rotavirus(5-12days). | Enteric Adenovirus _Identify via Immunoassay |
Norwald & SRSVs(Norovirus) cause epidemics of diarrhea/vomiting. Usually mild, self-limited(24-48hrs) & seen in older children, adults. | Calciviruses _VERY resistant to inactivation _Associated w/food(shellfish) |
Spread readily person-to-person & water-borne. Causes short/mild diarrhea in older kids/adults | Norovirus |
Acute dz caused by Vibrio cholerae infection. Massive human deaht. Frequent attendant of disasters | Cholera |
Colonizes in small intestine(without changing the physical integrity of the mucosa). Cause ACUTE & MASSIVE watery diarrhea. "RICE WATER" stools. Rapid depletion of fluids-->Hypovolemic shock, metabolic acidosis, death | Cholera _Incubate 1-5days w/abrupt sx onset |
Rice water diarrhea(1L/hr) w/m cramps, poor turgor, wrinkle skin over fingers(WASHERWOMAN HANDS), sunken eyes, NO pulse in extremities | Cholera _Incubate 1-5days w/abrupt sx onset |
G- Bent rod shape. NO spore formation. Facultative anaerobe. Motile, polar flagellum | Cholera _Incubate 1-5days w/abrupt sx onset of watery rice diarrhea |
Cholera serogroups classified by this | O (Somatic) antigens |
Serogroup O-1 | Classic Epidemic Cholera |
Serogroup O-139 | New cholera found in India. Until found this thought all was O-1 serogroup. |
Tx of Cholera | Fluid/electrolyte replacement |
How is cholera spread? | Contaminated food/drinking water. _Found naturally in marine coastal areas/estuaries |
1-20% in endemic regions carriers of this & are asymptomatic | Cholera |
Primary prevention for cholera | Proper sewage control |
Gastroenteritis to mild cholera-like illness. Most common cause of food-borne illness in Japan(coastal organism). Endemic in US Gulf Coast. Most frequently associated in US w/mishandling infected seafood | V parahaemolyticus |
Normal inhabitant of coastal waters. Associated w/OYSTERS. Season: common where WARM. | V Vulnificus |
Wound infections & contact w/seawater or oysters put you at risk for contracting this | V parahaemolyticus or V Vulnificus |
Consumption of raw oysters, underlying debilitating pt(alcoholism), bullous skin lesions, shock, liver dysfunction can cause this | Sepsis _high fatality rate |
Tx of sepsis | Tetracycline |
Raw oyster consumption may cause this | Acute self-limiting diarrhea |
Serogroup of E Coli | O Antigen=LPS |
Serotype of E Coli | H Antigen=Flagella |
Normal flora E coli this serogroup | O86 |
Disease carrier serogroup of E Coli | O55 |
E Coli that looks like cholera disease process. "TRAVELER'S" diarrhea(afebrile, watery). Food poisoning | ETEC =Enterotoxigenic E Coli |
E Coli that produces diarrhea which becomes bloody after 1-3days with cramps, vomiting. Fever in only ~50% pts. Can be fatal due to HEMOLYTIC UREMIC SYNDROME(HUS) | EHEC O157:H7 =Enterohemorrhagic E Coli |
Cannot ferment sorbitol so will appear as white colonies on MacConkey's sorbitol agar. | EHEC O157:H7 =Enterohemorrhagic E Coli |
Complications of EHEC O157:H7 | Hemolytic Uremic Syndrome Acute Renal Failure (8-10%) More common in elderly, young Shiga-like toxin(SLT) key virulence factor |
Key virulence factor for EHEC O157:H7? =Enterohemorrhagic E Coli | Shiga-like toxin |
Tx of EHEC O157:H7? =Enterohemorrhagic E Coli | Oral rehydration Avoid Abx Do NOT use Anti-Motility agents in kids/infants |
EHEC O157:H7 associated with this? =Enterohemorrhagic E Coli | Beef & Raw milk. Person-to-person documented Raw spinach |
NEW cause of HUS that's traced to alfalfa sprouts. High fatality rate, expressed Shiga toxin | E Coli O104:H4 |
Microbe widely found in chicken products | Camplyobacter jejuni _incubates 1-7days |
G- curved rod, motile, microaerophilic, grows well at 42'C | Camplyobacter jejuni _incubates 1-7days _Chicken products |
Pt has prodrome w/fever, headache, malaise, myalgia 12-24hrs BEFORE diarrhea. See loose stools to frank dysentery, fever, ab cramp. Severe acute Right LQ pain that mimics appendicitis | Camplyobacter jejuni _Improves after several days, self-limiting _Chicken products |
This diarrhea causing virus is carried & excreted for 2-3 wks after disease. Have severe acute ab pain in Right LQ (mimic appendicitis) because of invasion of mesenteric lymph nodes w/inflammation | Camplyobacter jejuni _Chicken products |
Found in intestinal tract of birds especially. Transmitted thru food source. mostly. High in young adults, peaks in summer months | Camplyobacter jejuni _Chicken products |
Complications of Campylobacter jejuni(found in chicken products) | Reiters Syndrome (HLA-B27 individuals) Guillain-Barre Syndrome |
Chief cause of Guillain-Barre Syndrome? | Camplyobacter jejuni _Chicken products |
Complication of this causes Reiters syndrome | Camplyobacter jejuni _Chicken products |
What are signs of Camplyobacter jejuni _Chicken products causing disease? | Fever and prodrome prior to diarrhea |
Consequence of infection w/Helicobacter Pylori | Chronic active gastritis Peptic ulcers |
G- curved rods that are HIGHLY motile. Stain best in tissue biopsy w/Giemsa. COPIUS UREASE production | Helicobacter Pylori |
Primarily targets pylors epithelial cells causing gastritis: cramps, halitosis, nausea, vomiting | Helicobacter Pylori |
Would eradicating Helicobacter Pylori relieve symptoms | NO correlation |
Virulence factor for Helicobacter Pylori | Urease _Produces CO2 & NH4 to protect virus(raises pH) and ammonium can be toxic to cells |
Gastritis caused by this MUST be from large ingestion. Smoking is a risk factor. Associated w/stomach adenocarcinoma | Helicobacter Pylori |
Dx of Helicobacter Pylori | Histo detection in bio samples+Culture _Microaerophilic environment w/high humidity, 7days incubation, special media _Detect w/CLO test |
CLO test | Tests for Urease Activity _Helicobacter Pylori DETECTION |
Tx of Helicobacter Pylori | Tetracycline+Bismuth-containing drugs |
GI infection prevention | Proper animal excretion control, food handling, hand wash, traveling: boil it, peel it, cook it or forget it. |
Facultative intracellular enteric bacilli-->inflammatory disease of large bowl. Incubate 3days. | Shigellosis _Normal watery diarrhea-->dysentery(blood, mucuous & PMNs in stool, fever, cramp) |
Blood, mucuous & PMNs in stool, fever, cramp is a progression from this watery diarrhea | Shigellosis _G Neg, NO spores, Facultative Anaerobe, NONmotile, NonLactose Forming _PMN & RBCs in diarrhea |
G Neg, NO spores, Facultative Anaerobe, NONmotile, NonLactose Forming that causes dysentery | Shigellosis _Blood & mucous in feces+Acute onset _PMN & RBCs in diarrhea |
COMPLICATIONS of Shigellosis? _Blood & mucous in feces+Acute onset _PMN & RBCs in diarrhea | Reiter's (Unspecified acute inflamm arthritis) & HUS (Hemolytic Uremic Syndrome) |
Causes of Reiter's Disease: urethritis, polyarthritis, inflamm eye disease, skin lesions (=nonspecific acute inflamm eye disease) | Campylobacter Jejuni OR Shigellosis |
Hemolytic Uremic Syndrome seen in these 2 stomach issues because of this toxin production. Causes acute renal failure. | Shigella Toxin: _EHEC (O157:H7) _Shigellosis |
What is the reservoir for Shigellosis? | Humans! _Therefore highly infectious in kids 1-4 and carrier state can exist ~1-2mos. _Person-to-Person transmission |
Most severe type of shigella | Group A: _S. Dysenteriae |
2nd most severe type of shigella | Group B: (Common in US) _S. Flexneri |
3rd most severe type of shigella | Group C: (Common in US) _S. Boydii |
LEAST severe type of shigella | Group D: _S. Sonnei |
Prevention of Shigella | Handwashing! |
Incubate 12-48hrs, sudden onset of sx. 2-3day duration in host (most severe infants/elderly). At risk if cancer, DM, AIDS, person on abx | Salmonellosis _G-, Non-spore form, Facultative anaerobe, Motile, Non-lactose Fermenting |
How do you determine diarrhea caused by salmonella or shigella. | Won't ferment lactose |
How you differentiate between salmonella & shigella?? | Both do not ferment lactose, if see: 1)RBC & PMN=Shigella 2)Macs & PMN=INC Leukocytes=Salmonella |
What do you see when you look at Salmonella in the lab? | Fecal leukocytes: MORE macs than PMNs -Culture: sample food/water/fecal/Blood if have fever _CANNOT ferment lactose! |
Can use a flourescent Ab test (FA) & serological confirmation for this dx | Salmonella _HIGH dose |
When should you give abx to treat Salmonella? | Only if disease is systemic (AIDS) |
Eggs, Beef, Pifs, Dogs, Cat, Reptiles are reservoirs for this | Salmonella _HIGH dose |
Highest incidence of salmonella | Infants & children 6mos-5yrs (can carry up from 1-2mos to a yr) _Summer/Fall |
Prevention of salmonella | Change food processing, change animal husbandry, change consumer preferences |
Owning a pet may carry risk of this if immunocompromised | Salmonella |
Caused by abx use & interaction with C Difficile (Bacillus, OBLIGATE Anaerobe, G+, forms subterminal spores) | Pseudomembranous Colitis (PMC) |
Abx which can cause Pseudomembranous Colitis (PMC) by INC C Difficile | Clindamycin, Cephalosporins, Ampicillin, some antineoplastics |
Why hard to distinguish Pseudomembranous Colitis (PMC) | 1_Diarrhea w/lower ab cramp OR 2_Severe colitis w/o pseudomembrane OR 3_Classic Pseudomembranous Colitis |
What type of colitis? Profuse diarrhea, pain, FEVER, nausea, malaise, dehydration | Severe colitis w/o pseudomembrane (no dying cells) |
Severe colitis sx w/ELEVATED YELLOW PLAQUES 2-10mm over mucosa. | Pseudomembranous Colitis (PMC) _See dying cells |
Fibrin mesh of necrotic cells, PMNs, Monos & RBCs | Pseudomembrane |
How do you detect Pseudomembranous Colitis (PMC) | Detect toxin in feces (EIA/Latex agglutination assay. Tissue culture assay) _Gram Stain of stool G+ rods w/SUBTERMINAL spores |
See subterminal spores | Pseudomembranous Colitis (PMC) _Abx-->C Difficile |
Many hospitals will screen abx-associated diarrhea for this | Pseudomembranous Colitis (PMC) _Abx-->C Difficile |
Pseudomembranous Colitis (PMC) Tx still may not prevent this | Relapse (20%). Many will suffer multiple relapses. |
Predisposing factor for Pseudomembranous Colitis (PMC) | Normal gut flora disruption allowing for subsequent colonization by C Difficile |
Many infants can harbor this organism as normal flora w/o being sick | C. Difficile |
Increased outbreaks of C. Difficile-->Pseudomembranous Colitis (PMC) here | Nosocomial (hospitals) _ASYMPTOMATIC pts act as reservoir --->Make sure to clean toilets |
Acute food-borne G+ bacillus (NONmotile). Aerotolerant anaerobe. Spore former | C. Perfringens Type A _SHORT incubation time (complete recovery in 1 day) _Meat/Poultry(cooking does NOT kill spores) _HIGH dose |
To dx C Perfrigens (G+ bacillus, NONmotile, Aerotolerant anaerobe, spore former) what must you do? | Isolate LARGE #'s of microbe in food/feces since HIGH dose organism |
G+, Bacillus, AEROBIC MOTILE spore former | Bacillus Cereus Foodborne Dz (No Fever!) 1)Emetic Form=1-5hrs after 2)Diarrgheal form=1-17hrs after _Grain/Rice/Veggies |
Preformed toxin will cause Upper GI sx 1-5hrs after ingestion of this G+, Bacillus, AEROBIC MOTILE spore former ? | Emetic Form of Bacillus Cereus Foodborne Dz _No fever _Grain/Rice/Veggies |
Ingestion of INC # of vegetative cells that produce this toxin will cause profuse watery diarrhea 1-17hrs after ingestion | Diarrheal Form of Bacillus Cereus (No fever) _G+, Bacillus, AEROBIC MOTILE spore former _Grain/Rice/Veggies |
Second ONLY to Salmonella as a cause of foodborne dz. Caused by consumption of HEAT STABLE PREFORMED TOXIN in food | Staphylococcal Foodborne Dz(Enterotoxin A) _Acute emetic/diarrhea 1-6hrs after eating _INC Saliva _Recover 1-4days |
Acute emetic/diarrhea with INC saliva after 1-6hrs of ingesting food. Self-limiting | Staphylococcal Foodborne Dz(Enterotoxin A) _Eating a HEAT STABLE PREFORMED TOXIN |
Virulence Factor for Staphylococcal Foodborne Dz(custard filled baked goods, canned foods, processed meats, potato salads) | Enterotoxin A(water sol, heat stable). _Emetic response: stimulate CNS to vomit _Diarrheal: INC transmucosal movement into lumen coupled w/DEC H20 Absorption |
Toxin absorbed in gut, stimulus reaches CNS impulse to vomiting center | Emetic Response of: Enterotoxin A=Virulence Factor for Staphylococcal Foodborne Dz _(custard filled baked goods, canned foods, processed meats, potato salads) |
INC fluid transmucosal movement into lumen coupled with DEC water absorption | Diarrheal Response of: Enterotoxin A=Virulence Factor for Staphylococcal Foodborne Dz _(custard filled baked goods, canned foods, processed meats, potato salads) |
Source of Enterotoxin A=Virulence Factor for Staphylococcal Foodborne Dz | Humans! (Human-to-human interaction) _Warm conditions _Only ~50% link to lesion-carrying individual linked to dz _(custard filled baked goods, canned foods, processed meats, potato salads) |
Can you use abx on Enterotoxin A=Virulence Factor for Staphylococcal Foodborne Dz | No, this is an intoxication, abx will NOT help |
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