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Genetic Eval of MR

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Answer
Developmental Delay   used for children under 5, descriptive term, used until valud IQ can be measured  
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Mental Retardation   Significant sub-average intellectual behavior and deficits in adaptive behavior  
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Etiology   a specific diagnosis that can be translated into useful clinical information for the family, including providing information about prognosis, recurrence risks, and preferred moes of therapy  
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Diagnostic yield   The percentage of time an etiology can be determined utilizing a specific evaluation test or scheme  
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Expanded phenotype   The full range of phenotypes seen with changes in a specific locus (gene), often initially a gene chance associated with a specific sydnrome  
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Rett Syndrome   1/10,000-1/15,00; Clinical phenotype of progressive autistiform disorder, exclusively in girls (X-Linked dominant with male lethality), severely imparised expressive language, loss of puprose hand skills, repitive hand movements, truncal ataxia, seizures,  
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Rett Syndrome gene   Gene= MECP2, Xp28  
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Phenotype of MECP-2 mutations male   Encephalopathy (static or progressive) may have peculiar silver-grey hair, Angelman, MR  
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Epidemiology... Incidence   Mental Retardation, males 4 times as common as females; neurodevelopmental disabilities  
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Reported emperic recurrence risks for MR   One child affected, negative family history ~5%  
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If the affected child with MR is male, ...   Brother 5-15%, sister 3-5%, all 2-10%  
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If the affect child with MR is female...   Brother 4-10%, Sister 5-8%, and all have a 3-5%  
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Inheritance of MR is..   polygenic/oligogenic  
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Polygenic inheritance   IQ dispalys all of the traits of polygenic inheritance... distributed in a normative manner; close relationship to parental IQs, quantitative trait, no sexual dimorphism  
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By definition, what % of the general population has an IQ in the MR Range?   2.5% (SD)  
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FISH   commonly used to determine if portion of chromosome is deleted.  
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MR Syndromes with Available FISH testing   Williams, Angelman, PW, Smith-Magenis, DiGeorge/VCFS, Miller-Dieker  
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Subtelomeric FISH Panel   40 individual FISH tests specific for subtelomeric regions (does not have 46 probes for acrocentric chromosomes)  
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Subtelomeric rearragements familial implications   Dependent on parental studies, 90% de novo, 10% positive in one parent  
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Genome microarray   Human Whole Genome Array, Large insert clones (BACs), Clones are arrayed in duplicate  
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CGH   Panels can be customized and are constantly evolving, has likely a 15-20% positive rate for MR  
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Gene Sequencing   FISH tests are very helpful in identifying duplication or deletions of specific loci, won't detect small changes, point mutations etc., often the only method to make a diagnosis is to sequence the gene; but that is very expensive and time consuming  
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Automated mutation screening WAVE   show few to no false negatives...  
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Epidiomiology of MR   Male: Female ratio of 4:1, one explanation is X-linked  
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Sample MRX gene panel   ARX, DLG3, FACL4, FTSK1, JARID1c, PQBP1, TM4SF2,ZNF41  
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Tiered/Step-wise evaluations are based upon...   1. Expected diagnostic yield, 2. Invasiveness of testing 3. Potential of intervention 4. Overall practicality of obtaining tests  
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Step 1 in Evaluation   Clinical Hx (prenatal, perinatal, postnatal including development, growth and behavior)  
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Step 2 in Eval   Family Hx (parental IQs, developmental abnormalities, psychiatric problems, birth defects, pregnancy loss, and other genetic problems)  
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Step 3 in Eval   Physical Examination (growth parameters, including head; major and minor anomalies and malformations, neurologic examination)  
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Importance of the dysmorphology eval   Establishes the diagnosis (62%), contributes to the diagnosis (79%)  
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What can be a significant aid in reaching a diagnosis?   A characteristic personality and behavioral pattern/behavioral phenotype  
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Behavioral phenotypes   Cognitive levels, static versus progressive, autistiform, disordered sleep, speech and language characteristics, self injurious/aggressive behaviors, associated neurosensory conditions  
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How many of all diagnoses can be made by history and physical examination alone?   1/3rd to 1/2  
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After the physical eval, what comes next?   Referral for ophthalmologic, audiologic, and/or psychometric testing  
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Neuropsychologic testing   Provides information beyond the simple "IQ" testing; gives information about processes, not just outcomes; non-verbal testing component; can't be performed until mid-childhood, positive predictive value for long term neurodevelopmental potential  
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What comes after referrals in the eval?   Diagnostic testing  
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Karyotypes... (high resolution)   Should be done in ALL developmentally delayed individuals without a recognized cause,  
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Reported diagnostic yield of karyotypes   9-36%  
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Pigmentary changes   -Embryological association of skin and CNS (neuroectoderm), individuals with neurologic disorders and pigmentary abnormalities should have a fibroblast karyotype if the lymphocytic karyotype is normal; biopsy can be from any site +unselected patch of skin  
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Subtelomere/CGH studies   1. All patients with MR, 10-15% yield as a single test  
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Molecular testing   Non-syndrome MR (Fragile X, MECP-2), XLMR panel is FH indicates, selected tests based on H&P  
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Fragile X Syndrome: Diagnostic testing   -Recommended for all patients with MR, Diagnostic yield of 2%, reported range of 0-20%, regional uneven distribution (?)  
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Cranial Imaging   30-96% of those with MR have CNS structural abnormalities detectable by imaging  
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Cranial Imaging leads to an etiology in what % of patients?   4  
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Abnormal head size and neurological findings increased the likelihood of...   detecting abnormalities  
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Dr. Schaefer says to do cranial imaging on...   all patients without a diagnosis  
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Metabolic testing   Yield only 1% or less; only if clinical indicators; targeted testing, not screening; check newborn screening!  
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Identifiable causes of MR   Chromosome abnormalities 25-30%; UNKNOWN 30-50%  
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Diagnoses increase by how much with return visits for repeat history and physical examination?   5 to 20%  
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What happens when the brain malfunctions?   1. Cognition (MR), 2. CP (Motor dysfunction) 3. Movement DOs (HD, Ataxias) 4. Paraximsomal events (seizures- episodic discharge), 5. Autism- behavioral problems  
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