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LECT 3 & 4
Physiology
| Question | Answer |
|---|---|
| What is the makeup of a virus? | Nucleic acid surrounded by a protein shell |
| What are the cellular components of a eukaryotic cell? | 1) PM, 2) Nucleus with DNA and RNA 3) Cytoplasm, with cell organelles and cytosol |
| SEE TABLE 3-1 | SEE TABLE 3-1 |
| What are the functions of the PM? | Selective barrier, has receptors, anchors to other cells, and is a site for protein attachment for generation and transmittion of force |
| What is the primary content of the bilayer? | Phospholipids |
| How are the phospholipids structured in the cell? | No chemical bonds link the phospholipids, they hang out in the cell. Lots of random motion |
| What is the role of cholestrol in the membrane? | To maintain fluidity and is important in vesicle formation |
| What is a primary component of the cell membrane? It helps transport stuff through the membrane | Proteins |
| What are integral proteins? | Amphipathic with non-polar segment in the lipid region and let stuff through them to get to the inside of the cell |
| What are peripheral proteins? | Located at membrane surface and bound to polar regions of integral membrane proteins |
| What are the three types of cell membrane junctions? | Desmonsome, tight junctions, and gap junctions |
| What are desmosomes? | Tightly hold cells together, like in our skin, but they allow stretchin |
| How are desmonosmes linked? | Their membranes are linked by fibers |
| How are they seperated? | There are extra cellular spaces filled with cementing fluid |
| what are tight junctions? | They don't allow much movement and are very restrictive of what can go out |
| How are their membranes seperated? | There is no space between them |
| Where are tight junctions primarily found? | In bladder and blood vessels |
| What are Gap Junctions? | Allow molecules to pass from one cell to another, serves to help in cell-cell communication |
| Where are gap junctios primarily found? | In cardiac muscle, to help in controlling the electrical activity b/w cells |
| COMPONENTS OF THE EUKARYOTIC CELL | COMPONENTS OF THE EUKARYOTIC CELL |
| Nucleus | Largest organelle |
| Give an example of an anuclear cell and a cell with serveral nuclei | RBC, Skeletal muscle cells |
| What is the primary function of the nucleus? | Storage and transmission of DNA |
| What is the nuclear envelope? | Doubl membrane around nucleus |
| What are the nuclear pores and porins? | They allow stuff in cell, but are very specific |
| What is the chromatin? | DNA and associated proteins |
| CYTOPLASM | WHAT'S IN THE CYTOPLASM? |
| Ribosomes: | Proteins are made by these guys |
| What are proteins made of? | Amino acids |
| Where do proteins go from the ribosomes to what? | Ribosomes to lumen of ER then to Golgi |
| ER | ER |
| Rough ER function vs. agranular function: | Packs proteins for rough and synthesize fats for smooth |
| Primary function of golgi? | Modfication of proteins and sorts the proteins received from ER into vesicles to be sent to other parts of the cell |
| In lamen's terms? | Sticks a carb or something on the proteins and decides where they go |
| Mitochondria's primary function? | Produce ATP, uses oxygen to get carbon dioxide |
| What kind of cells do you think would have the most amounts of mitochondria? | The brain b/c it uses lots of energy |
| What is the structure of the lysosome? | Surrounded by one membrane |
| What is the function of the lysosome? | Breaks down bacteria and cellular garbage with the acidic fluid and digestive enzymes |
| What is the structure of the peroxisome? | Surrounded by a single membrane? |
| How do peroxisomes and lysosomes differ? | Internel contencts differ and peroxisome destroys side products of oxygen (not cellular junk) |
| What is the primary function of filaments? | Form the cytoskeleton (which maintains cell shape), helps in cell movement, and helps protect DNA during cell division |
| What are the three types of filaments? | Microfilaments, intermediate filmaments and microtubuluoles |
| What is a gene a sequence of? | DNA nucleotides |
| What key information does it contain? | It determines the amino acid dequence of a single protein |
| How many allelles does a person get? | A copy of each gene from mom and dad |
| How is the DNA of genes arranged? | Three nucleotides (triplet) |
| What does this triplet encode? | a single amino acid |
| What determines the sequnce of the amino acids in a protein? | The sequence of the triplets |
| What is another name for these triplets and where do we usually use this term? | Codons; we call them this when DNA is becoming RNA |
| What are some factors regulating protein synthesis? | 1. Rate of transcription of a gene into mRNA, stability of mRNA (if stable, will hang out a lot, if unstable, will hang out a little) 3. Initiation (translation of mRNA by ribosomes) |
| SEE BOOK ON SYNTHESIS | SEE BOOK ON SYNTHESIS |
| LECTURE 4 | LECTURE 4 |
| How do proteins interact with their environment? | They bind to DNA or RNA , 2. They bind to other proteins, 3. They bind to carbs and lipids, and 4. they bind to ions |
| Why do they bind to DNA and RNA? | To control amount of protein present |
| What is a ligand? | Any molecule that binds to a specific binding site on a protein by a force other than a covalent bond |
| In lamen's term? | Something that binds to something |
| Is this a permanent bond? | No, not very tight at all |
| What is the binding site? | Region in molecule to which a ligand binds |
| What ditates the shape of the binding site? | The amino acid dequences |
| Can a site accept more than one ligand? | Yes, it isn't specific to one type of a ligand |
| What is saturatioN? | Fraction of total binding sites that are occupied at nay given time |
| What does saturation depend upon/ | Ligand concentration and binding site affinity |
| What is affinity? | The strength of the ligand and binding site interaction |
| In lamen's terms? | How close are shapes of ligand and receptor? |
| If something is tight binding, does it have low or high affinity? | High affinity |
| (blank) | The protein withhigher affinity for the ligand |
| If something is tight binding, does it have low or high affinity? | High affinity |
| Thus, what two characteristics influence whether the ligand will bind to a specific protein? | The affinity and concentration |
| If we have 5000 of ligand A and 50 of ligand b, but ligand b has more affinity for the protein, which one will be bound? | Ligand b b/c it has most affinity |
| Does protein shape affect binding to ligands? | Yes!!! Shape is really important |
| What is allosteric binding? | Lingand binds to receptor to activate Response |
| SEE FIGURE 3-32 A | 3-32 A |
| What is phosphorylation? | Adding PO4 to receptor |
| What does a kinase do? | Add |
| SEE FIGURE 3-32 B | 3-32 B |
| What does cellular function primarily depend on? | Control of protein activity |
| What is the above form of alteration, involving a change in phosphate groups called? | Covaletn modulation |
| What factor determines the types and amounts of proteins? | Synthesis and degradation |
| What enables the cell to keep going? | Energy |
| What is metabolism? | Chemical reactions that occur within a living organism |
| What are anabolic steroids responsible for? | Building up muscle |
| What is cataboilsm? | Cellular breakdown of molecules to get energy |
| What is anabolism? | Synthesis of molecules |
| Whati s a fundemental rule about energy and its creation and destruction? | Can't be created or destroyed, so it must be transferred |
| What determines chemical reaction rates? | Concentration, Eact, temp, and catalyst presence |
| What is the role of the catalyst in the cell? | Decreases Eact |
| Which type of reaction, reversible or non reversible yields more energy? | The irreversible one |
| What is the unit of measurement for energy released or consumed in chemical reactions? | CALORIES |
| See fig 3-33 | 3-33 |
| What helps in giving control of enzyme mediated reactions? | Substrate concentrations, enzymje concentrations, enzyme activity (phosphorylation) |
| SEE FIG 3-35 | 3-35 |
| What is the rate limiting reaction? | Slowest reaction in a series of reactions |
| Is ATP stored? | NO, cells use ATP to get ENERGY!! |
| How does one generate ATP? | ADP plus a phosphate and 7kcal/mol equals atp and water |
| What are the by-products of breaking down fuel molecules? | 40% ATP and 60% heat |
| MEMORIZE FIG. 3-46 | 3-46 |
| Why do we use glycolysis for? | To catabolize carbs |
| What does glycolysis do? | Converts glucose to pyruvate |
| How much ATP do we get from glycolysis? | 2 ATP molecules |
| What is teh equation for a glycolysis reaction? | Glucose, and 2 ADP, 2 phosphates -->2 lactate and 2 ATP + water |
| What's with the symbolism at the bottom of the slide on | page 44 |
| Where does the glycolysis reaction take place? | Cytosol |
| What is the only molecule that is capable of going through glycolysis? | Sugar (GLUCOSE) |
| What sort of reaction is glycolysis? | Anaerobic reaction |
| How many ATPs do we get as a result of the reaction? | 2 |
| SEE FIG 3-40 | SEE FIG 3-40 |
| What happens in the presence of oxygen? | Pyruvate enters the KREBS cycle |
| What happens to the pyruvate if no/little oxygen is present? | Pyruvate becomes converted to lactate |
| What molecules become catabolized in the krebs cycle? | Proteins, carbs, and fats |
| Where does the krebs cycle occur? | Mitochondria |
| What is produced in the krebs cycle? | hydrogen ions, carbon dioxide and ATP |
| What is the key enzyme involved with the krebs cycle? | Acetyl-Co A |
| Where does the zcetyl come from? | It is a product of glycolysis |
| What two coenzymes are required by the KC? | NAD+ and FAD |
| Why are they important? | Because protons are transferred to NAD and FAD to make NADH and FADH, which are needed to carry electrons to enter ETC |
| Where does the KC take place? | Matrix of mitochondria |
| What can the KC catabolyze? | Carbs, fats, and proteins |
| How much ATP is produced in ETC per molecule of glucose? | 34 ATP |
| Where does the ETC occur? | In mitochondria |
| Where does the energy needed to form the ATP come from in oxydative phosphorylatioN? | From the enrgy released when hydrogen combines with oxygen to form water |
| How much energy is needed to form one atp? | 7 kcal of energy |
| What are the two protein types that are needed in ETC? | 1) Those that help protons transport and 2) those that couple enrgy by reaction for making ATP |
| What is the chemiosmotic hypothesis? | Move protons into compoartment b/w two mitochondrion membrans |
| NOTE: | P. 90 (gly) P92 (KC), P. 94 (ETC) |
| How is the conformation of a protein determined? | Sequence of amino acids |
| What does affinity depend upon? | Shape of ligand and binding site |
| What does chemical specificity depend upon? | Shape of binding site only |