Autoantibodies
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| SLE | Antinuclear antibodies (ANA)
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| Specific for SLE | Anti-dsDNA, Anti-Smith antibodies
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| Drug-induced Lupus | Antihistone antibodies
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| Rheumatoid Arthritis | Anti-IgG (rheumatoid factor)
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| Scleroderma (CREST) | Anticentromere
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| Scleroderma (diffuse) | Anti-Scl-70
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| Primary Biliary Cirrhosis | Antimitochondrial (AMA)
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| Celiac Disease | Antigliadin, antiendomysial
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| Goodpasture's syndrome | Anti-basement membrane
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| Pemphigus vulgaris | Anti-desmoglein
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| Hashimoto's thyroiditis | Antimicrosomial, antithyroglobulin
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| Polymyositis, dermatomyositis | Anti-Jo-1
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| Sjogren's syndrome | Anti-SS-A (anti-Ro), Anti-SS-B (anti-La)
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| Mixed Connective Tissue Disease | Anti-U1 RNP (ribonucleoprotein)
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| Autoimmune Hepatitis | Anti-smooth muscle
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| Type 1 Diabetes Mellitus | Anti-glutamate decarboxylase
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| Wegener's Granulomatosis | c-ANCA
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| Other vasculitides | p-ANCA
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